PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G039200.1 | ||||||||
Common Name | POPTR_0002s04030g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 143aa MW: 16522.1 Da PI: 5.7542 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.9e-19 | 21 | 71 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+G+r+++ +g+++AeIrdp+ ng +r +lg+f+taeeAa+a+++a+ +++g+ Potri.002G039200.1 21 YRGIRRRP-WGKFAAEIRDPTRNG--TRRWLGTFDTAEEAARAYDRAAFAFRGH 71 9*******.**********98887..999**********************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.8E-36 | 20 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-23 | 20 | 79 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.5 | 20 | 78 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-31 | 20 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.47E-30 | 21 | 79 | No hit | No description |
PRINTS | PR00367 | 4.1E-11 | 21 | 32 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.1E-13 | 21 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-11 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
METYQGEKNT KKQEKRRENA YRGIRRRPWG KFAAEIRDPT RNGTRRWLGT FDTAEEAARA 60 YDRAAFAFRG HLAILNFPNE YQHQETNSTM SFASSSSFST ENPLSYGNEV SSTNGQEVIE 120 FEYLDNKLLE ELLETDDHSR QL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-29 | 21 | 128 | 15 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 10 | 27 | KKQEKRRENAYRGIRRRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G039200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002300780.1 | 1e-102 | ethylene-responsive transcription factor ERF098 | ||||
Swissprot | Q9LTC5 | 2e-45 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | B9GS21 | 1e-101 | B9GS21_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s04030.1 | 1e-102 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 3e-34 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G039200.1 |
Entrez Gene | 7471972 |
Publications ? help Back to Top | |||
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