PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G039000.1
Common NamePOPTR_0002s04010g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 237aa    MW: 25968.2 Da    PI: 8.4587
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G039000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.5e-15106155355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr ++ +g ++AeIrd + ng   r++lg+f t e Aa a+++a+++l g
  Potri.002G039000.1 106 YRGVRNRP-WGTYAAEIRDSTRNG--VRVWLGTFETGEAAALAYDQAALSLQG 155
                         9****777.**********44465..***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.128105163IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-20105165IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-28105164IPR001471AP2/ERF domain
SMARTSM003804.6E-32105169IPR001471AP2/ERF domain
CDDcd000182.29E-16106164No hitNo description
PRINTSPR003675.0E-9106117IPR001471AP2/ERF domain
PfamPF008471.7E-10106155IPR001471AP2/ERF domain
PRINTSPR003675.0E-9129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDHSFFFNNP NQEFSTSPPF GLLDPSWDKL PGFSPFNSND SEGSQETLPS DVPLTEAKAS  60
THSIASDVPP NIAKNNLPQL SSSKEIEEQE ATPKAKKNIP TRKKTYRGVR NRPWGTYAAE  120
IRDSTRNGVR VWLGTFETGE AAALAYDQAA LSLQGSKAVL NFPIEQVRKS LEELKCGFTD  180
WCSPAEALKK THSKRKPVSG KRKGKGLATK EVLVLEDLGA DYLETLLSSC ERGIPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-25104164161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G039000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302048.21e-175ethylene-responsive transcription factor 1B
SwissprotA0A3Q7I5Y95e-51ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A2K2BD471e-173A0A2K2BD47_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04010.11e-160(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1713338
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.18e-42ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]