PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G038500.2 | ||||||||
Common Name | POPTR_0002s03960g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 242aa MW: 27512.9 Da PI: 5.0082 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3.2e-16 | 36 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l Potri.002G038500.2 36 RGNFSREEEDTIIKLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 81 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.51E-21 | 17 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.054 | 17 | 30 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-11 | 17 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.271 | 31 | 85 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 35 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 36 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.18E-11 | 38 | 81 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 44 | 82 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MLVLNHFFLT HFSGLLRCGK SCRLRWINYL RPDIKRGNFS REEEDTIIKL HEMLGNRWSA 60 IAARLPGRTD NEIKNVWHTH LKKRLEQNHF APEINGRSVD VSRFNHELKT GPEIVSSSNV 120 VAAGCDQSKE HRPISPQQCS SDVSSVTTVD TSNDMCTKVA ESDDFLEMDE IFWSEVLSAD 180 NSSMMSDYSA ISTEPQLQFP FSPLIIDVEQ VQATNSNMYD GMDFWHNLFT RAGELPELTE 240 I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-19 | 7 | 86 | 32 | 109 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G038500.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302045.1 | 1e-170 | transcription factor MYB14 | ||||
TrEMBL | B9GS15 | 1e-169 | B9GS15_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s03960.1 | 1e-170 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 1e-48 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G038500.2 |
Entrez Gene | 7479974 |