PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G037100.2 | ||||||||
Common Name | POPTR_0002s03830g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 229aa MW: 26308.5 Da PI: 5.9561 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102 | 7.9e-32 | 2 | 86 | 45 | 129 |
NAM 45 wdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 w+L+ +k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd++vl+ ++e+vg++ktLvfyk+rap+g kt W+mhe+rle Potri.002G037100.2 2 WNLE-VAKLNATEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPtTREVVGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 86 7786.4455779**************************************977888***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 40.482 | 1 | 104 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.75E-38 | 6 | 104 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-15 | 14 | 85 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MWNLEVAKLN ATEWYFFSFR DRKYATGFRT NRATTSGYWK ATGKDRTVLD PTTREVVGMR 60 KTLVFYKNRA PNGIKTGWIM HEFRLETPHM PPKEDWVLCR VFHKSKAEDS TRFMFESTTD 120 SGSTVNLTAS PFTADHQTLA RGYQQMISLS STPPHQDQTS LLNLLQLSQD RNSKYPMDTD 180 ISSKAVDEYG FLWDDMNLEE NSLGDGVVAS NLEDMRFEID HNSMDVFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-28 | 7 | 104 | 66 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-28 | 7 | 104 | 66 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-28 | 7 | 104 | 66 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-28 | 7 | 104 | 66 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-28 | 7 | 104 | 69 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-28 | 7 | 104 | 69 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-28 | 7 | 104 | 69 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-28 | 7 | 104 | 69 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-28 | 7 | 104 | 69 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-28 | 7 | 104 | 69 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-28 | 7 | 104 | 69 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-28 | 7 | 104 | 69 | 168 | NAC domain-containing protein 19 |
4dul_A | 3e-28 | 7 | 104 | 66 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-28 | 7 | 104 | 66 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G037100.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002300772.3 | 1e-159 | protein CUP-SHAPED COTYLEDON 2 | ||||
Swissprot | Q84TE6 | 1e-42 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A2K2BCZ7 | 1e-158 | A0A2K2BCZ7_POPTR; NAC family protein | ||||
STRING | POPTR_0002s03830.1 | 1e-172 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 4e-63 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G037100.2 |
Entrez Gene | 7471961 |