PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G037100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 281aa MW: 32250.3 Da PI: 5.3945 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.8 | 1.3e-50 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF P+deelv++yL kk++++++ ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd++ Potri.002G037100.1 10 LPPGFRFYPNDEELVCHYLYKKITNEEVLK-GTLVEIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRT 99 79************************9655.78***************88888999*********************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 vl+ ++e+vg++ktLvfyk+rap+g kt W+mhe+rle Potri.002G037100.1 100 VLDPtTREVVGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 138 ***977888***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-60 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.46 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-27 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MGLRDIGATL PPGFRFYPND EELVCHYLYK KITNEEVLKG TLVEIDLHTC EPWQLPEVAK 60 LNATEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRTV LDPTTREVVG MRKTLVFYKN 120 RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKSKAE DSTRFMFEST TDSGSTVNLT 180 ASPFTADHQT LARGYQQMIS LSSTPPHQDQ TSLLNLLQLS QDRNSKYPMD TDISSKAVDE 240 YGFLWDDMNL EENSLGDGVV ASNLEDMRFE IDHNSMDVFL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-47 | 9 | 159 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-47 | 9 | 159 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-47 | 9 | 159 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-47 | 9 | 159 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-47 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
3swm_B | 5e-47 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
3swm_C | 5e-47 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
3swm_D | 5e-47 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
3swp_A | 5e-47 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
3swp_B | 5e-47 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
3swp_C | 5e-47 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
3swp_D | 5e-47 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
4dul_A | 4e-47 | 9 | 159 | 16 | 168 | NAC domain-containing protein 19 |
4dul_B | 4e-47 | 9 | 159 | 16 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G037100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002300772.3 | 0.0 | protein CUP-SHAPED COTYLEDON 2 | ||||
Swissprot | Q84TE6 | 2e-63 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A2K2BCZ7 | 0.0 | A0A2K2BCZ7_POPTR; NAC family protein | ||||
STRING | POPTR_0002s03830.1 | 1e-158 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4381 | 33 | 59 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 2e-93 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G037100.1 |