PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G030900.1
Common NamePOPTR_0002s03230g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 449aa    MW: 50632.3 Da    PI: 6.8501
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G030900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98e-093914281954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+  e+  LA++ gLt++qV++WF N R +
  Potri.002G030900.1 391 FEHflHPYPNDYEKLMLASQAGLTKNQVSNWFINARVR 428
                         664459******************************88 PP
2BELL1085.8e-35253324172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         e++elq k+akL+ ll+eV+ rY++y++q++ v+ssFe++aglg+ak+Yt+lAl+a+S+hF +L+dai++qi
  Potri.002G030900.1 253 EKHELQLKIAKLIALLKEVEGRYEKYYHQMEEVVSSFEEIAGLGAAKSYTALALQAMSKHFCNLRDAIVSQI 324
                         689********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.8E-35184322IPR006563POX domain
PfamPF075262.5E-39190321IPR006563POX domain
PROSITE profilePS5007111.693369432IPR001356Homeobox domain
SMARTSM003891.3E-7372436IPR001356Homeobox domain
CDDcd000864.74E-9372433No hitNo description
Gene3DG3DSA:1.10.10.604.8E-26377438IPR009057Homeodomain-like
SuperFamilySSF466896.42E-17378439IPR009057Homeodomain-like
PfamPF059207.4E-16389428IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MVPMGSQDSP PNPASGMLHQ FIISDSIASQ NQFQSQNFSV FGPDLRGSNT FSQSHGVLPS  60
IKSLEERMSR SIDLVQVPSA VQESEISHTR HLMDLLGAAN ETNHQAQRLS LSLGSRMLVP  120
QFQYRQRSFN SDLMSPSYLV PREEAREAYN LGGEQVNNDY SLTGSGFPQS STSLSRPSTS  180
YGTESFAVAI GNSRYLKPAQ SLLEEIVHVS CQAVEISNEK YVGKLFPCGQ RGSLRLSSEL  240
KVELWGIGLV QAEKHELQLK IAKLIALLKE VEGRYEKYYH QMEEVVSSFE EIAGLGAAKS  300
YTALALQAMS KHFCNLRDAI VSQIDETKRK FSRDLPKIST ELSQLSLFDK ETKHNRISLQ  360
QLGMMQSQRQ AWRPIRGLPE TSVTILRSWL FEHFLHPYPN DYEKLMLASQ AGLTKNQVSN  420
WFINARVRLW KPMIEEMYKE EFADHSED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15378436563Homeobox protein Meis2
3k2a_B1e-15378436563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G030900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302013.20.0BEL1-like homeodomain protein 11
RefseqXP_024450355.10.0BEL1-like homeodomain protein 11
RefseqXP_024450356.10.0BEL1-like homeodomain protein 11
SwissprotQ1PFD11e-101BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A2K2BCP00.0A0A2K2BCP0_POPTR; Uncharacterized protein
STRINGPOPTR_0002s03230.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126452329
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.17e-97BEL1-like homeodomain 11