PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G029400.1 | ||||||||
Common Name | POPTR_0002s03090g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 241aa MW: 26478.6 Da PI: 5.3596 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 3e-19 | 40 | 89 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r +r +lg+++t eAa a++aa++kl+g Potri.002G029400.1 40 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTYDTSHEAAMAYDAAARKLYG 89 69****999.**********8...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.07E-22 | 39 | 99 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.0E-30 | 40 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.405 | 40 | 97 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-14 | 40 | 89 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-37 | 40 | 103 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-21 | 40 | 97 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.5E-9 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-9 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MSKSIMSGFG EKKQFKKPEQ ASSRKGCMRG KGGPENALCT YKGVRQRTWG KWVAEIREPN 60 RGARLWLGTY DTSHEAAMAY DAAARKLYGP EAKLNLPELQ VNSSQFPASP ANSQVIQMTN 120 QPSHLIQNSS PTSTYSSNIP NMESNEAKPI LYNHNPIMSF SNESVDSNGM EVENDANFGR 180 SGDVIKEFSA NLNVNMTFND SIWAEAALSI NFPVMDDPGI FASNLMEESG GDTMQTPWCM 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-18 | 41 | 105 | 6 | 70 | ATERF1 |
3gcc_A | 3e-18 | 41 | 105 | 6 | 70 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G029400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302006.2 | 0.0 | dehydration-responsive element-binding protein 2D | ||||
TrEMBL | B9GRH7 | 1e-180 | B9GRH7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s03090.1 | 1e-180 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 2e-51 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G029400.1 |
Entrez Gene | 7490680 |