PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.002G028500.1

Common Name

POPTR_0002s03000g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

SRS

Protein Properties

Length: 322aa MW: 35286.7 Da PI: 8.136

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G028500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	228.2	1.5e-70	93	251	4	153
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.........aeaaskrkrelkskkqsa 85 g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++++++ + +++kr+re+ + +s+ Potri.002G028500.1 93 GGMNCQDCGNQAKKDCPHSRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQNQEQQqqqqqqqqfRGENPKRQREN-QGGASS 182 789*************************************************999888776655666555545555555554.677888 PP DUF702 86 lsstklssaes.kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 l++t+l++++s + le++ +P+ev+s+avfrcv+vs++dd+e++laYqtav+igGhvf+GiLydqG++ Potri.002G028500.1 183 LACTRLATTTSdQLGLEMTAFPPEVNSQAVFRCVKVSALDDAEDQLAYQTAVNIGGHVFRGILYDQGPD 251 99999988776155799999*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	8.9E-68	94	251	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.3E-26	96	138	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.3E-26	202	250	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MAGWFYLGER EGPSSKQDQE KEVNNSSLFL YRSSNEEIYN NNKGFELWPQ YYPQQQNMNS 60 FSFGVGPSRR NFSDDHSPRS GFTVMRQGGG LGGGMNCQDC GNQAKKDCPH SRCRTCCKSR 120 GFQCQTHVKS TWVPAAKRRE RQQQLAALQQ QNQEQQQQQQ QQQQFRGENP KRQRENQGGA 180 SSLACTRLAT TTSDQLGLEM TAFPPEVNSQ AVFRCVKVSA LDDAEDQLAY QTAVNIGGHV 240 FRGILYDQGP DGRYTSTGGE SSSSGAQQLG LITAATTSTT ATTTNTGNPA AGNTLFDPSS 300 LYPAPLNAFI AGTQFFPPPR S*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G028500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP011966	1e-125	AP011966.1 Jatropha curcas DNA, clone: JHL18I08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024450682.1	0.0	protein SHI RELATED SEQUENCE 5
Swissprot	Q9LQZ5	1e-101	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A2K2BCI1	0.0	A0A2K2BCI1_POPTR; Uncharacterized protein
STRING	POPTR_0002s03000.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125
Representative plant	OGRP1872	11	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	3e-86	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	Potri.002G028500.1
Entrez Gene	7490677

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]