PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G023200.1
Common NamePOPTR_0002s02480g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 406aa    MW: 44153.2 Da    PI: 9.0427
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G023200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014172193323
                         ETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                         C+ Cg++F+  ++L+ H+++ H
  Potri.002G023200.1 172 CTQCGEVFPKIESLELHQKVrH 193
                         *******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.556170198IPR007087Zinc finger, C2H2
PROSITE patternPS000280172193IPR007087Zinc finger, C2H2
SuperFamilySSF563992.3E-24195401No hitNo description
Gene3DG3DSA:3.90.228.104.7E-12197401IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MAALTFLQEH KENRQKQPSR CKRKLQKEKE KEKQPSSWDQ IKNLLTCKQI EGSRVHDPSK  60
NPIGYSKLGS SCSSICSFKD VVHGNTRVVH RADNSPESST LGQETGLLSR KGVSTGSSST  120
RSLTSSGRSN SGVTCSSSSR GMQFRKLSGC YECHMIVDPS RYPSARTTIS ACTQCGEVFP  180
KIESLELHQK VRHAVSELGP EDSGRNIVEI IFKSSWLKKD NPICKIERIL KVHNTQRTIQ  240
RFEDCRDAVK TRALNSTKKN PRCAADGNEL LRFHCTTLTC SLGSLGSSSL CGSIPVCGVC  300
TIIRHGFQGI ECKGVSTTAS SGRAHDSLWG CTDGRRAMLV CRVIAGRVKR VAEDALPPEE  360
DGASAGSYDS VAGGAGIYSS LEELSVFNPR AILPCFVVIY KALES*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.119360.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G023200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2769660.0GU276966.1 Populus balsamifera isolate FBK13 haplotype A C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769670.0GU276967.1 Populus balsamifera isolate FBK13 haplotype B C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769680.0GU276968.1 Populus balsamifera isolate FRE01 haplotype A C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769690.0GU276969.1 Populus balsamifera isolate FRE01 haplotype B C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769700.0GU276970.1 Populus balsamifera isolate GAL12 haplotype A C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769710.0GU276971.1 Populus balsamifera isolate GAL12 haplotype B C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769720.0GU276972.1 Populus balsamifera isolate GIL14 haplotype A C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769730.0GU276973.1 Populus balsamifera isolate GIL14 haplotype B C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769740.0GU276974.1 Populus balsamifera isolate INU03 haplotype A C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769750.0GU276975.1 Populus balsamifera isolate INU03 haplotype B C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769760.0GU276976.1 Populus balsamifera isolate MGR10 haplotype A C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769770.0GU276977.1 Populus balsamifera isolate MGR10 haplotype B C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769780.0GU276978.1 Populus balsamifera isolate NWL07 haplotype A C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769790.0GU276979.1 Populus balsamifera isolate NWL07 haplotype B C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769800.0GU276980.1 Populus balsamifera isolate POR11 haplotype A C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769810.0GU276981.1 Populus balsamifera isolate POR11 haplotype B C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769820.0GU276982.1 Populus balsamifera isolate RNA13 haplotype A C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769830.0GU276983.1 Populus balsamifera isolate RNA13 haplotype B C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769840.0GU276984.1 Populus balsamifera isolate WHR03 haplotype A C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769850.0GU276985.1 Populus balsamifera isolate WHR03 haplotype B C2H2 type zinc finger family protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301980.10.0uncharacterized protein LOC7490653
TrEMBLB9GQV90.0B9GQV9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s02480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103413037
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-154C2H2-like zinc finger protein