PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.002G009700.1

Common Name

POPTR_0002s01060g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 923aa MW: 101292 Da PI: 6.3543

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G009700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.8	2.5e-29	612	663	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Potri.002G009700.1 612 AEKTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGINRWPSRKIKKV 663 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.655	602	683	IPR003035	RWP-RK domain
Pfam	PF02042	3.1E-25	615	663	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.64E-24	818	909	No hit	No description
PROSITE profile	PS51745	26.22	825	908	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	5.1E-22	825	905	No hit	No description
SMART	SM00666	4.5E-27	825	908	IPR000270	PB1 domain
Pfam	PF00564	1.5E-19	826	907	IPR000270	PB1 domain
CDD	cd06407	5.98E-38	826	905	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 923 aa Download sequence Send to blast
MEDGGLSPGT MLGATVDSVS VMDFDYMDEL LLEGCWLETT DGSEFLNPSL SNSAAFFDSS 60 FMWPTPEINH GDSASSPSQK GNQEDNQISM FPGNSTLSDI QARSPAGETA VSVAGWDDNA 120 TDGSELGKRW WIGPTPNPSV ETSVKRRLIK ALECIKDLTK NKDVLIQIWV PVNRGGRRVL 180 TTHDQPFSLD PSSEKLASYR DISVKYQFSA EEDSKDSVGL PGRVFLGKVP EWTPDVRFFR 240 SDEYPRVNHA QLYDVRGTLA LPVFEQGSRT CLGVIEVVTT SQKIKYRPEL ESVCKALETV 300 DLRSSEVPSI QNLQACNMSY QAALPEIQKL LRAACETHRL PLAQTWVPCT QQGKGGCRHS 360 NENYYRCVST VDDACCVADS AIQGFQEACS EHHLLKGQGV AGQAFMTNQP CFSGDVTSYG 420 KTEYPLSHHA RMFGLCAAVA IRLRSIYIGT TDFVLEFFLP VNCRDPQEQK KMLNSLSAII 480 QHVSQTLRVV TDKELVEETD LPFSEVLVPS DGRSSGEETS TVKQSCSERH SRDNSPWTAC 540 LSEVQPSGSN ISLSQKDKQK VMLREKSSEN RENQEDCSLR ESIKCGRDST SAEGSFSSAG 600 TSKTGEKRRA KAEKTITLQV LRQYFAGSLK DAAKSIGVCP TTLKRICRQH GINRWPSRKI 660 KKVGHSLKKL QRVIDSVEGA SGTVQIDSFY KNFPELASPT LSRTSPLSTL KSSSHPKPSG 720 MQPEGGTFSS QVTAPKSPSP SCSLGSSSSH SCSSGAIAAS EDPVSGENSG NGVLKMVRSN 780 VELHASSPGE QERMPRSQSH KTLAELGSIP PLSKDGSRLS QETDAHRLKV TYGNEIIRLR 840 MSNKWGFKDL LQEIVRRFNI DDIHRFDLKY LDDDSEWVLL TCDDDLEECI AICGSSDNQT 900 IKLLLEVSPR PLGRSSHSSG LS*

Sequence ? help Back to Top

Protein Sequence Length: 923 aa Download sequence Send to blast

MEDGGLSPGT MLGATVDSVS VMDFDYMDEL LLEGCWLETT DGSEFLNPSL SNSAAFFDSS  60
FMWPTPEINH GDSASSPSQK GNQEDNQISM FPGNSTLSDI QARSPAGETA VSVAGWDDNA  120
TDGSELGKRW WIGPTPNPSV ETSVKRRLIK ALECIKDLTK NKDVLIQIWV PVNRGGRRVL  180
TTHDQPFSLD PSSEKLASYR DISVKYQFSA EEDSKDSVGL PGRVFLGKVP EWTPDVRFFR  240
SDEYPRVNHA QLYDVRGTLA LPVFEQGSRT CLGVIEVVTT SQKIKYRPEL ESVCKALETV  300
DLRSSEVPSI QNLQACNMSY QAALPEIQKL LRAACETHRL PLAQTWVPCT QQGKGGCRHS  360
NENYYRCVST VDDACCVADS AIQGFQEACS EHHLLKGQGV AGQAFMTNQP CFSGDVTSYG  420
KTEYPLSHHA RMFGLCAAVA IRLRSIYIGT TDFVLEFFLP VNCRDPQEQK KMLNSLSAII  480
QHVSQTLRVV TDKELVEETD LPFSEVLVPS DGRSSGEETS TVKQSCSERH SRDNSPWTAC  540
LSEVQPSGSN ISLSQKDKQK VMLREKSSEN RENQEDCSLR ESIKCGRDST SAEGSFSSAG  600
TSKTGEKRRA KAEKTITLQV LRQYFAGSLK DAAKSIGVCP TTLKRICRQH GINRWPSRKI  660
KKVGHSLKKL QRVIDSVEGA SGTVQIDSFY KNFPELASPT LSRTSPLSTL KSSSHPKPSG  720
MQPEGGTFSS QVTAPKSPSP SCSLGSSSSH SCSSGAIAAS EDPVSGENSG NGVLKMVRSN  780
VELHASSPGE QERMPRSQSH KTLAELGSIP PLSKDGSRLS QETDAHRLKV TYGNEIIRLR  840
MSNKWGFKDL LQEIVRRFNI DDIHRFDLKY LDDDSEWVLL TCDDDLEECI AICGSSDNQT  900
IKLLLEVSPR PLGRSSHSSG LS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G009700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024451282.1	0.0	protein NLP4
Refseq	XP_024451283.1	0.0	protein NLP4
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A2K2BBL2	0.0	A0A2K2BBL2_POPTR; Uncharacterized protein
STRING	POPTR_0005s27310.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Potri.002G009700.1
Entrez Gene	7496857