PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G472800.1
Common NamePOPTR_0001s47670g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 733aa    MW: 78906 Da    PI: 6.685
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G472800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.61.2e-28319376260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         d gyn rKYGqK+vkgse+prsYY+Ct+++C+vkkkvers  +++++ei+Y+g H h+k
  Potri.001G472800.1 319 DKGYNFRKYGQKQVKGSEYPRSYYKCTHPNCSVKKKVERSL-EGHITEIIYKGAHSHPK 376
                         569**************************************.***************85 PP
2WRKY103.71e-32530588159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  Potri.001G472800.1 530 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 588
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.036313377IPR003657WRKY domain
SuperFamilySSF1182903.79E-22316377IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.2E-25316377IPR003657WRKY domain
SMARTSM007742.7E-28318376IPR003657WRKY domain
PfamPF031061.6E-20321375IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.5E-37515590IPR003657WRKY domain
SuperFamilySSF1182901.7E-28522590IPR003657WRKY domain
PROSITE profilePS5081138.664525590IPR003657WRKY domain
SMARTSM007741.5E-37530589IPR003657WRKY domain
PfamPF031066.6E-25531588IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MAGIDDNVAI IGDWVPPSPS PRAFFSVMLG DDINSSTITE PPGENRTKGL FLGQPEQMTT  60
GNAEKKDGAR TSGAQLTELG SFSEQKSNSR GGLVERMAAR AGFNAPRLNT ESIRSAETSL  120
NPEIRSPYLT IPPGLSPTTL LESPVFLSNL AQPSPTTGKF SFFPNGSSKN STAGSKLPDN  180
SKETFFEDIN SSSFAFKPMG ESGSSFFLGG TSKITSATFL QQSFPSMDVS VHSENALQSH  240
DVAPAKVQSE SRNSLHFPAE FFKLTTEKDN GGNTVADQRT FDTVGGNAEH SSPLDEQQDE  300
EGDQRASGDS MAAGGTPSDK GYNFRKYGQK QVKGSEYPRS YYKCTHPNCS VKKKVERSLE  360
GHITEIIYKG AHSHPKPLPN RRSAVGSLDT QLDIPEQVVP QIGSVNDSAW AGTQKGIAAG  420
TSDWRRDNVE VTSSASGGPG PEFGNPSSSV QAQSGTPFES ADAIDASSTF SNDEDDDRAT  480
HGSVGYDGEG EESESKRRKI ETYATEMSGA TRAIREPRVV VQTTSEVDIL DDGYRWRKYG  540
QKVVKGNPNP RSYYKCTSAG CTVRKHVERA SHDLKSVITT YEGKHNHDVP AARNSSHVNS  600
GTSNATPGQA AVAVQTHVHR HESSQVHNSM ARFERPPAFG SFSLPGRQQL GPSPGFSFGM  660
NQPGLANLAM AGLGQGQPKM PVMPIHPYLA QQHPGNEMGF MMPKEEPKVG PVTEPSLNLS  720
NNRTLYQQIM RK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-37319591878Probable WRKY transcription factor 4
2lex_A8e-37319591878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.10460.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G472800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441234.10.0probable WRKY transcription factor 2 isoform X2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A2K2CEK80.0A0A2K2CEK8_POPTR; Uncharacterized protein
TrEMBLA0A385JHS00.0A0A385JHS0_POPTO; WRKY DNA-binding protein 2
STRINGPOPTR_0001s47670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95243443
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]