PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G453100.1
Common NamePOPTR_0001s45740g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 339aa    MW: 36008.2 Da    PI: 6.6675
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G453100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-182272256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                        ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a++ a+++l+g+
  Potri.001G453100.1 22 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDDAARALRGA 72
                        689******.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.5082279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-292279IPR001471AP2/ERF domain
SMARTSM003804.5E-352285IPR001471AP2/ERF domain
PfamPF008472.4E-122271IPR001471AP2/ERF domain
CDDcd000182.67E-172279No hitNo description
PRINTSPR003671.1E-72334IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-202380IPR016177DNA-binding domain
PRINTSPR003671.1E-74561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGAPTGGGLR GRRKSSSRGH HRFVGVRQRP SGRWVAEIKD SLQKVRLWLG TFDTAEDAAR  60
AYDDAARALR GANARTNFEL PQPAPNSGAG RGSLIEVEPF SFEEVCGTGS EAGGILGALK  120
AKLLDGKGLQ VLPSAACSSS VQPNLVANTS HKNNSKRDLA STASISPGAG TLNAIQDPCT  180
SGSRKIDLVL DHDHGDMMAG HVAAGLWNQL CHSTTATTNL EWPSEPAPSE VAWATQMNHI  240
SDQAAMFTSS TSITTSAWPL SATAQPCVDL MYSNPCTVEM PMNKISRMIT TNMPTSQIDE  300
QGIWSTEQQF LHCDNSGWTG GNSTWDPFLL YPHSSALG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1420781271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G453100.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1492980.0AC149298.1 Populus trichocarpa clone Pop1-021H24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038124.10.0PREDICTED: dehydration-responsive element-binding protein 1J-like
TrEMBLB9GJI70.0B9GJI7_POPTR; Uncharacterized protein
STRINGPOPTR_0001s45740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-15related to AP2 11