PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.001G452700.2 | ||||||||
Common Name | POPTR_0001s45700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 640aa MW: 70612.7 Da PI: 4.5877 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.4 | 2.8e-53 | 10 | 141 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp GfrF+Ptdeel+++yL+ k++g++ e+ evi+e+d++k+ePwdLp + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd Potri.001G452700.2 10 LPLGFRFRPTDEELISHYLRLKINGRDSEV-EVIPEIDVCKWEPWDLPgQsVIKTDDPEWFFFCPRDRKYPNGHRSNRATDAGYWKATGKD 99 699************************999.99**************96447777888********************************* PP NAM 90 kevlsk....kgelvglkktLvfykgrapkgektdWvmheyr 127 ++++s+ +++l+g+kktLvfy+grapkg++t+W+mheyr Potri.001G452700.2 100 RTIKSRksagNTTLIGMKKTLVFYRGRAPKGKRTNWIMHEYR 141 *****977766677***************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-60 | 4 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.776 | 10 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-27 | 11 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 640 aa Download sequence Send to blast |
MVAMVSMDSL PLGFRFRPTD EELISHYLRL KINGRDSEVE VIPEIDVCKW EPWDLPGQSV 60 IKTDDPEWFF FCPRDRKYPN GHRSNRATDA GYWKATGKDR TIKSRKSAGN TTLIGMKKTL 120 VFYRGRAPKG KRTNWIMHEY RPTEEDLDGT GPGQVAFVLF RLFRKPEERT NGVKYDEIEQ 180 IGYSPTAAKS SPDNASSDLV QETATSDMHS GKQSEDIKMW LTESDNVTAN SVGPVDICSN 240 RHATSDIEDQ VPEATAVEAC PLLDESSLIH EPVSGELDRE VFSPVQSHIP ADLGCYIDSP 300 YASDFGNDQN GFPFQDVSIE QDVSITELLD RFFNNHDECS GEETSKNNLG VGSETQLCGQ 360 IPPGNSYAPD NGIYSFMNNL QHVSLMRVPA WPSDQFCSNE LFQMQPALGT LRAPTPVFYG 420 ELGRGNISHF GNNFVGQDAP SAKSAISSFG VLNSMEEATS QMTSVDNGSG VSGTGIRIRA 480 RQPRVRPQSD IFIAQGSGPR RILLQLQTKL LSESVGYCKV KDAGYIEDED EVQSSVTEAT 540 GDAEKQTPTA DYLQKESPLP SSKTNREIAE ESSSDLRLRA KREGESESSQ IASSAFPAAP 600 PVYISIFLLL IAIVAFAGIW RSLMTVKFLW IQDGASDNL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-43 | 9 | 165 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-43 | 9 | 165 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-43 | 9 | 165 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-43 | 9 | 165 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-43 | 9 | 165 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-43 | 9 | 165 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-43 | 9 | 165 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-43 | 9 | 165 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-43 | 9 | 165 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-43 | 9 | 165 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-43 | 9 | 165 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-43 | 9 | 165 | 19 | 168 | NAC domain-containing protein 19 |
3ulx_A | 2e-43 | 9 | 141 | 14 | 139 | Stress-induced transcription factor NAC1 |
4dul_A | 2e-43 | 9 | 165 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-43 | 9 | 165 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.001G452700.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC149298 | 0.0 | AC149298.1 Populus trichocarpa clone Pop1-021H24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011038026.1 | 0.0 | PREDICTED: uncharacterized protein LOC105135051 | ||||
TrEMBL | A0A2K2CDK4 | 0.0 | A0A2K2CDK4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s45700.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G33060.1 | 1e-145 | NAC 014 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.001G452700.2 |
Entrez Gene | 7480349 |