PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G452700.1
Common NamePOPTR_0001s45700g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 640aa    MW: 70612.7 Da    PI: 4.5877
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G452700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.42.8e-53101411127
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lp GfrF+Ptdeel+++yL+ k++g++ e+ evi+e+d++k+ePwdLp +  +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd
  Potri.001G452700.1  10 LPLGFRFRPTDEELISHYLRLKINGRDSEV-EVIPEIDVCKWEPWDLPgQsVIKTDDPEWFFFCPRDRKYPNGHRSNRATDAGYWKATGKD 99 
                         699************************999.99**************96447777888********************************* PP

                 NAM  90 kevlsk....kgelvglkktLvfykgrapkgektdWvmheyr 127
                         ++++s+    +++l+g+kktLvfy+grapkg++t+W+mheyr
  Potri.001G452700.1 100 RTIKSRksagNTTLIGMKKTLVFYRGRAPKGKRTNWIMHEYR 141
                         *****977766677***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-604165IPR003441NAC domain
PROSITE profilePS5100556.77610165IPR003441NAC domain
PfamPF023651.4E-2711141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MVAMVSMDSL PLGFRFRPTD EELISHYLRL KINGRDSEVE VIPEIDVCKW EPWDLPGQSV  60
IKTDDPEWFF FCPRDRKYPN GHRSNRATDA GYWKATGKDR TIKSRKSAGN TTLIGMKKTL  120
VFYRGRAPKG KRTNWIMHEY RPTEEDLDGT GPGQVAFVLF RLFRKPEERT NGVKYDEIEQ  180
IGYSPTAAKS SPDNASSDLV QETATSDMHS GKQSEDIKMW LTESDNVTAN SVGPVDICSN  240
RHATSDIEDQ VPEATAVEAC PLLDESSLIH EPVSGELDRE VFSPVQSHIP ADLGCYIDSP  300
YASDFGNDQN GFPFQDVSIE QDVSITELLD RFFNNHDECS GEETSKNNLG VGSETQLCGQ  360
IPPGNSYAPD NGIYSFMNNL QHVSLMRVPA WPSDQFCSNE LFQMQPALGT LRAPTPVFYG  420
ELGRGNISHF GNNFVGQDAP SAKSAISSFG VLNSMEEATS QMTSVDNGSG VSGTGIRIRA  480
RQPRVRPQSD IFIAQGSGPR RILLQLQTKL LSESVGYCKV KDAGYIEDED EVQSSVTEAT  540
GDAEKQTPTA DYLQKESPLP SSKTNREIAE ESSSDLRLRA KREGESESSQ IASSAFPAAP  600
PVYISIFLLL IAIVAFAGIW RSLMTVKFLW IQDGASDNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-43916516165NO APICAL MERISTEM PROTEIN
1ut4_B2e-43916516165NO APICAL MERISTEM PROTEIN
1ut7_A2e-43916516165NO APICAL MERISTEM PROTEIN
1ut7_B2e-43916516165NO APICAL MERISTEM PROTEIN
3swm_A2e-43916519168NAC domain-containing protein 19
3swm_B2e-43916519168NAC domain-containing protein 19
3swm_C2e-43916519168NAC domain-containing protein 19
3swm_D2e-43916519168NAC domain-containing protein 19
3swp_A2e-43916519168NAC domain-containing protein 19
3swp_B2e-43916519168NAC domain-containing protein 19
3swp_C2e-43916519168NAC domain-containing protein 19
3swp_D2e-43916519168NAC domain-containing protein 19
3ulx_A2e-43914114139Stress-induced transcription factor NAC1
4dul_A2e-43916516165NAC domain-containing protein 19
4dul_B2e-43916516165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G452700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1492980.0AC149298.1 Populus trichocarpa clone Pop1-021H24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038026.10.0PREDICTED: uncharacterized protein LOC105135051
TrEMBLA0A2K2CDK40.0A0A2K2CDK4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s45700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136251825
Representative plantOGRP1172646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-145NAC 014