PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G442400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | LSD | ||||||||
Protein Properties | Length: 193aa MW: 20506.8 Da PI: 7.8664 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 30.1 | 8.2e-10 | 25 | 49 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gC +L YP GA++V+CalC tV Potri.001G442400.1 25 CRGCASVLLYPSGASNVCCALCSTV 49 9**********************99 PP | |||||||
2 | zf-LSD1 | 38.5 | 1.9e-12 | 64 | 88 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCr lL+YP GA+ VRC++C+ V Potri.001G442400.1 64 CRGCRSLLMYPHGATTVRCSCCHVV 88 9**********************98 PP | |||||||
3 | zf-LSD1 | 38.9 | 1.4e-12 | 102 | 126 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt L+YP G+psV+C++C+ V Potri.001G442400.1 102 CGNCRTALMYPNGSPSVKCPVCHYV 126 **********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 4.2E-9 | 22 | 52 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-7 | 25 | 49 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.3E-13 | 61 | 90 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.0E-10 | 64 | 88 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.1E-11 | 99 | 129 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-11 | 102 | 126 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MGFLMFCCRE EEEDRQREMQ SQVVCRGCAS VLLYPSGASN VCCALCSTVT SIPSPGMDMA 60 QLICRGCRSL LMYPHGATTV RCSCCHVVNI APGYNQAAHV NCGNCRTALM YPNGSPSVKC 120 PVCHYVTNVS MANMRIPLPA NRPNGIGGTA PSTSMPLPHS QTQTVVVENP MSVDESGKLV 180 SNVVVGVTTE KK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G442400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182684 | 1e-87 | AC182684.2 Populus trichocarpa clone Pop1-37C15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002300492.2 | 1e-139 | protein LOL2 isoform X1 | ||||
Swissprot | Q2QMB3 | 8e-67 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | A0A2K2CD31 | 1e-137 | A0A2K2CD31_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s43300.1 | 1e-122 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4027 | 33 | 61 | Representative plant | OGRP1146 | 17 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 8e-65 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G442400.1 |
Publications ? help Back to Top | |||
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