PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G404400.1 | ||||||||
Common Name | POPTR_0001s41490g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 361aa MW: 39255.2 Da PI: 9.484 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.1 | 8.2e-54 | 28 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+ Potri.001G404400.1 28 LPPGFRFHPTDEELVVHYLKKKTTSAPLPV-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKP 117 79****************************.88***************988899************************************* PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 vls+ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl Potri.001G404400.1 118 VLSSgGTQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 155 ***977788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-65 | 24 | 189 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.997 | 28 | 189 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-28 | 29 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045995 | Biological Process | regulation of embryonic development | ||||
GO:0048317 | Biological Process | seed morphogenesis | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MERTDSSTGG AGGGGGGGGG RGSQQPNLPP GFRFHPTDEE LVVHYLKKKT TSAPLPVAII 60 AEVDLYKFDP WELPAKATFG EQEWYFFSPR DRKYPNGARP NRAATSGYWK ATGTDKPVLS 120 SGGTQKVGVK KALVFYGGKP PKGIKTNWIM HEYRLADNKV NNKPPGCDLG NKKNSLRLDD 180 WVLCRIYKKN NTQRPMDHDK DDSMDDVLGS IPPSISVGSH QNGTLHLAKG TNFGALLDND 240 HNLFEGIISS SDGIRSSSSS LSHMASSVTK RDLLMLPPKR TLPSLYWTGE DMVGPSSSKR 300 FQGGINGDEI VVRTDGNSSV ATLLGELPQT PQLHQQTMLG SMADGIFRSP YQIPSMNWYS 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-73 | 27 | 191 | 14 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269|PubMed:16055634}. | |||||
Uniprot | TISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269|PubMed:15100403, ECO:0000269|PubMed:16055634, ECO:0000269|PubMed:18849494}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00361 | DAP | Transfer from AT3G15510 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G404400.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU823447 | 0.0 | EU823447.1 Populus tremula isolate swl284-042 NAC domain protein gene, partial cds. | |||
GenBank | EU823461 | 0.0 | EU823461.1 Populus tremula isolate swl284-63E NAC domain protein gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006370307.1 | 0.0 | NAC transcription factor 56 | ||||
Swissprot | Q9LD44 | 1e-125 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | B9N1L1 | 0.0 | B9N1L1_POPTR; NAC family protein | ||||
STRING | POPTR_0001s41490.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1623 | 34 | 98 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-119 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G404400.1 |
Entrez Gene | 18095625 |
Publications ? help Back to Top | |||
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