PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G398200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | SBP | ||||||||
Protein Properties | Length: 245aa MW: 27427 Da PI: 9.0901 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.8 | 2.6e-42 | 120 | 196 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqve+C a+l++ak+yhrrhkvCevh+k+p+v+v+gl+qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk++a Potri.001G398200.1 120 CQVEKCGANLTDAKRYHRRHKVCEVHAKSPAVVVAGLRQRFCQQCSRFHELVEFDETKRSCRRRLAGHNERRRKSTA 196 **************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.8E-35 | 112 | 181 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.59 | 117 | 194 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.35E-39 | 118 | 198 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.5E-32 | 120 | 193 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MLLVVLPTFF TFYFTLSPTD LHFSTSKATP HLASYHTIPQ LCDILPKIMD ARTLEGKHSS 60 LKEKMINKDD FLIEDELEDD MEEYESGGGV GLADDEKKKG AGVMHGKRGT GSGGASPPSC 120 QVEKCGANLT DAKRYHRRHK VCEVHAKSPA VVVAGLRQRF CQQCSRFHEL VEFDETKRSC 180 RRRLAGHNER RRKSTAESYG EGSNRKGVNT PLKENPCRQA DERGRFQINI PPQGSSSYKR 240 SQIR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-36 | 112 | 193 | 3 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Increases during floral transition and stay high thereafter. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the inflorescence apical meristem and young flowers. {ECO:0000269|PubMed:10524240}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00359 | DAP | Transfer from AT3G15270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G398200.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156. {ECO:0000269|PubMed:16914499}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU231969 | 1e-104 | CU231969.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006370233.1 | 1e-143 | squamosa promoter-binding protein 1 | ||||
Swissprot | Q9S758 | 2e-49 | SPL5_ARATH; Squamosa promoter-binding-like protein 5 | ||||
TrEMBL | A0A2K2CB25 | 0.0 | A0A2K2CB25_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s40870.1 | 1e-143 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 2e-51 | squamosa promoter binding protein-like 4 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G398200.1 |
Publications ? help Back to Top | |||
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