PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G395100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 206aa MW: 23745.7 Da PI: 8.8085 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.2 | 2.4e-17 | 56 | 108 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t++q++ Le+ F n+++ e + +LA++lg++ rq+ +W+qN+Ra++k Potri.001G395100.1 56 KKRLTEDQVRLLERTFTTNKKLEPELKVQLANQLGVPPRQIAIWYQNKRARWK 108 5679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 106.1 | 2.6e-34 | 55 | 145 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +k+rl+++qv+lLE++F++++kLepe Kv+la++Lg+ prq+a+W+qn+RAR+kt+ lE dy++L+ ++++ ++++rLe+ev +L+eel Potri.001G395100.1 55 NKKRLTEDQVRLLERTFTTNKKLEPELKVQLANQLGVPPRQIAIWYQNKRARWKTQSLELDYNTLQVRLENALADRRRLEREVVRLQEELW 145 79*************************************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.645 | 50 | 110 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-14 | 52 | 114 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-17 | 54 | 119 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 9.6E-15 | 56 | 108 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.95E-14 | 56 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-18 | 57 | 117 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 85 | 108 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MNPPISLTKL SHLHNFQYNH FPAFLSSNSV SFSNRMDFFN SQTQQKQQYL PKHNNKKRLT 60 EDQVRLLERT FTTNKKLEPE LKVQLANQLG VPPRQIAIWY QNKRARWKTQ SLELDYNTLQ 120 VRLENALADR RRLEREVVRL QEELWQAQQM VFAVNQETAA QPAVNFSCNS SCDDRGSSSL 180 HEGVNGEVLQ LEELYACLYG AGGGF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.15768 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G395100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146937 | 0.0 | EF146937.1 Populus trichocarpa clone WS01225_C08 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006370197.2 | 1e-152 | homeobox-leucine zipper protein ATHB-52 | ||||
TrEMBL | A0A2K2CAW7 | 1e-151 | A0A2K2CAW7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s40540.1 | 1e-123 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11011 | 22 | 39 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 1e-33 | homeobox protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G395100.1 |