PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G380900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | STAT | ||||||||
Protein Properties | Length: 707aa MW: 79831.3 Da PI: 5.9391 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 198.3 | 7.2e-62 | 219 | 336 | 1 | 118 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipk 91 ldvvllna+ q+v+k++e+vasL+yadsgl+vek++d+e+pLL+s+dG+ef+s+drp kll+G+as+klkisqLsskcdnrLfrik+eipk Potri.001G380900.1 219 LDVVLLNAICQAVNKELEIVASLVYADSGLPVEKTSDDEDPLLASCDGIEFASYDRPGKLLHGHASLKLKISQLSSKCDNRLFRIKLEIPK 309 8****************************************************************************************** PP STAT 92 lkkypfleavskpirCisrsrntrsss 118 ++ y+flea+s+pirCisrsrn r+s Potri.001G380900.1 310 FSGYHFLEAFSHPIRCISRSRNPRTSL 336 **********************99764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.120.200 | 2.9E-7 | 14 | 165 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
SuperFamily | SSF49899 | 1.57E-5 | 27 | 168 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Pfam | PF13385 | 7.7E-7 | 28 | 169 | No hit | No description |
CDD | cd10338 | 5.40E-55 | 594 | 701 | No hit | No description |
Gene3D | G3DSA:3.30.505.10 | 1.7E-6 | 598 | 684 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 5.16E-8 | 599 | 674 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 9.485 | 605 | 706 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 707 aa Download sequence Send to blast |
MGSDNNNVIN RKDYMLLKDF RKEIEVENEK DFSISFWVYL INSSTAAFPA TIIKQVYSDI 60 SSDAPFLVLN EKKIITLFPF LHAHKETTNF SNSTSMEIEF PLENWIHVGC EVVTDMLRFH 120 INGKIVREQP QSFSLDKSSN SNGLRKITLA GAGGDDALQG YVHHVEVLPL SMSIKEHYVK 180 DPPVRLSIDL SSTSEIDEDS DRIWNIVGGK ASCRRIFSLD VVLLNAICQA VNKELEIVAS 240 LVYADSGLPV EKTSDDEDPL LASCDGIEFA SYDRPGKLLH GHASLKLKIS QLSSKCDNRL 300 FRIKLEIPKF SGYHFLEAFS HPIRCISRSR NPRTSLTWKR PTSAADPLNK HQSFGLCNGS 360 LELQQNSIHK IKPSPSSKRI KLGQERTSAT GQPDVACYSD TWTTNQVANA VGTQLARGAE 420 NIEEADNSPS VSDSIEERLS DFNIMSSGGY SISDVIIFKY CLGGLTDRAL LLKEVATSAS 480 EEELFRLANE VSLYSGCSHH RRQIVISKRL IEEGTKFWNS ISQNNRHIQW ENVIFEIEER 540 FMRITCSNTR SLTEQDFELL RRISGCGEYM AQENFEKIWR WLYPVAFTLT SDSINTIWNS 600 TSPKWIEGFI TKEEAELSLQ GPRGLQEPGT FVLRFPTSRS WPHPDAGCLI VTYVGSDYTV 660 HHRLLSLDYI YSCEESEMNG KSLEDMLFAE PELSRLGRIV RQRQLT* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:15073273}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G380900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208085 | 0.0 | AC208085.1 Populus trichocarpa clone JGIACSB05-D05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024455331.1 | 0.0 | SH2 domain-containing protein A | ||||
Swissprot | Q56XZ1 | 0.0 | SHB_ARATH; SH2 domain-containing protein B | ||||
TrEMBL | A0A2K2CAA6 | 0.0 | A0A2K2CAA6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s38990.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6710 | 30 | 36 | Representative plant | OGRP5941 | 16 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 0.0 | SH2 domain protein B |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G380900.1 |
Publications ? help Back to Top | |||
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