PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G375800.1 | ||||||||
Common Name | POPTR_0001s38480g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 414aa MW: 45287.9 Da PI: 6.7703 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119.8 | 3.3e-37 | 35 | 149 | 2 | 96 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaessss 80 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak++i+el+++ ++++ Potri.001G375800.1 35 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKASIDELAELpawdpttagftrA-------TSKTTTR 118 79**************************************************************5555443332210.......2233333 PP TCP 81 sasnsssg...............kaaksaak 96 s+++++++ kaa++aa Potri.001G375800.1 119 STQQQNISdereyqlsmenvaasKAAAAAAI 149 3333333333333333433433222222221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.5E-34 | 35 | 158 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.877 | 37 | 95 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MGESHHQAAT SSRLGIRNTV GEIVEVQGGH IVRSTGRKDR HSKVCTAKGP RDRRVRLSAH 60 TAIQFYDVQD RLGYDRPSKA VDWLIKKAKA SIDELAELPA WDPTTAGFTR ATSKTTTRST 120 QQQNISDERE YQLSMENVAA SKAAAAAAIE VQNMQQQMAE NPDCSSGFLP PSLDSDAIAD 180 TIKTFFPMGA STETSSPTIQ FQNYPPDLLS RTSSQSQDLR LSLQSFQEPI LLQHQAHHHG 240 HQAQNEHQVF SGTTAHYLGL DGSSSGWSEQ HHTPEINRFQ RNLVAWNAAG GGGGGGGGFF 300 FNTPLPPLQT MSPSPLIQPF FGQNQFFSQR GPLQSSNMPS VRAWIDPAIT PDHHEQQQIP 360 QIYHQQTAIS GIGFTASGGE FYGFRVPARI QGEDEEHDGI HNKPSSASSD SRH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-20 | 42 | 95 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-20 | 42 | 95 | 1 | 54 | Putative transcription factor PCF6 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.15813 | 0.0 | catkin| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledons during embryogenesis. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G375800.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006370036.2 | 0.0 | transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 1e-108 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A2K2CA04 | 0.0 | A0A2K2CA04_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s38480.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 3e-92 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G375800.1 |
Entrez Gene | 18095390 |