PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G373300.2
Common NamePOPTR_0001s38230g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HB-other
Protein Properties Length: 379aa    MW: 41960.6 Da    PI: 7.4539
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G373300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.63.2e-0613532555
                        --HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
            Homeobox 25 psaeereeLAkkl..........gLterqVkvWFqNrRake 55
                        p +e    LA+k           +++ +qV +WFqNrR+  
  Potri.001G373300.2 13 PAREVLVSLAEKFsesserkgkiQVQMKQVWNWFQNRRYAI 53
                        5666666666666666666666699*************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.556156IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.3E-5361IPR009057Homeodomain-like
CDDcd000860.00211854No hitNo description
SuperFamilySSF466897.7E-8858IPR009057Homeodomain-like
PfamPF167191.5E-40113240IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDAILQEHHN MMPAREVLVS LAEKFSESSE RKGKIQVQMK QVWNWFQNRR YAIRAKSNKA  60
PMKLNITPMP RDDSAAARSV PQQAAAPIPD AVPATTSASS AAGARRATSE NSYMEFEAKS  120
GRDGAWYDVG TFQSHRYLDK GDPEVLVRFA GFGPDEDEWL NVCKHVRQRS LPCEASECVA  180
VLPGDLILCF QEGKDQALYF DAHVLDAQRR RHDVRGCRCR FLVRYDHDQS EEIVPLRKIC  240
RRPETDYRLL QLHAANDSAA TDQQKTSVDP SIASTLRVAA SATETMLQQQ HNTGVAAPVS  300
QANVSQPAKT IIAEPKEAAT LSAVDSGNPS FISTAVFPSV TALRLPLLCW RVEWLRVAAL  360
VALERTCSLM YLDSCSVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-441142444134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-441142444134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-441142444134SHH1 SAWADEE
4iur_B2e-441142444134SHH1 SAWADEE
4iut_A2e-441142444134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-441142444134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-441142444134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-441142444134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-441142444134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-441142444134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G373300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459260.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-133SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2K2C9W10.0A0A2K2C9W1_POPTR; Uncharacterized protein
STRINGPOPTR_0001s38230.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-113sequence-specific DNA binding transcription factors;sequence-specific DNA binding