PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G373300.1
Common NamePOPTR_0001s38230g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HB-other
Protein Properties Length: 400aa    MW: 44330.2 Da    PI: 7.4535
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G373300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.51.7e-0631742255
                        SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
            Homeobox 22 nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                        n+ p +e    LA+k           +++ +qV +WFqNrR+  
  Potri.001G373300.1 31 NMMPAREVLVSLAEKFsesserkgkiQVQMKQVWNWFQNRRYAI 74
                        677888888888888888888888889**************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-9580IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-61382IPR009057Homeodomain-like
PROSITE profilePS500719.1351377IPR001356Homeobox domain
CDDcd000860.00212975No hitNo description
PfamPF167191.6E-40134261IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MGRPPSNGGP SFRFMQYEVT EMDAILQEHH NMMPAREVLV SLAEKFSESS ERKGKIQVQM  60
KQVWNWFQNR RYAIRAKSNK APMKLNITPM PRDDSAAARS VPQQAAAPIP DAVPATTSAS  120
SAAGARRATS ENSYMEFEAK SGRDGAWYDV GTFQSHRYLD KGDPEVLVRF AGFGPDEDEW  180
LNVCKHVRQR SLPCEASECV AVLPGDLILC FQEGKDQALY FDAHVLDAQR RRHDVRGCRC  240
RFLVRYDHDQ SEEIVPLRKI CRRPETDYRL LQLHAANDSA ATDQQKTSVD PSIASTLRVA  300
ASATETMLQQ QHNTGVAAPV SQANVSQPAK TIIAEPKEAA TLSAVDSGNP SFISTAVFPS  360
VTALRLPLLC WRVEWLRVAA LVALERTCSL MYLDSCSVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A3e-441352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B3e-441352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A3e-441352654134SHH1 SAWADEE
4iur_B3e-441352654134SHH1 SAWADEE
4iut_A3e-441352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B3e-441352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A3e-441352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B3e-441352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A3e-441352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B3e-441352654134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G373300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459260.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-147SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2K2C9W20.0A0A2K2C9W2_POPTR; Uncharacterized protein
STRINGEOY131340.0(Theobroma cacao)
STRINGPOPTR_0001s38230.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Representative plantOGRP16411419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-127sequence-specific DNA binding transcription factors;sequence-specific DNA binding