PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G372100.7 | ||||||||
Common Name | POPTR_0001s38100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NF-YA | ||||||||
Protein Properties | Length: 220aa MW: 24193.7 Da PI: 7.0227 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.4 | 2e-32 | 125 | 181 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k +ksrkpylheSRh+hAl+R+Rg+gGrF Potri.001G372100.7 125 EEPVFVNAKQYHGILRRRQSRAKAESESKA-IKSRKPYLHESRHQHALKRARGCGGRF 181 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.1E-36 | 123 | 184 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.148 | 124 | 184 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.6E-27 | 126 | 181 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.4E-23 | 127 | 149 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 129 | 149 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.4E-23 | 158 | 181 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MRFEFGDSVC ITAMTSSLHD LSDNSEADEQ QNESEPQIQS SSPAMAQAHP GFSTPNVQYA 60 TPQLGAGHAM APATYPYPDP YYRSIFAPYD PQPYPPQPYG AQPMVHLQLM GIQQAGVPLP 120 SDAVEEPVFV NAKQYHGILR RRQSRAKAES ESKAIKSRKP YLHESRHQHA LKRARGCGGR 180 FLNSKKQENQ EHNGVASGDK SQSNINLNSD KNDIVSSND* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-21 | 124 | 189 | 1 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.12256 | 0.0 | bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G372100.7 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182693 | 1e-72 | AC182693.2 Populus trichocarpa clone Pop1-44N6, complete sequence. | |||
GenBank | AC187864 | 1e-72 | AC187864.2 Populus trichocarpa clone Pop1-32E3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024448163.1 | 1e-163 | nuclear transcription factor Y subunit A-7 isoform X2 | ||||
Swissprot | Q84JP1 | 9e-70 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | A0A2K2C9T0 | 1e-162 | A0A2K2C9T0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s38100.1 | 1e-147 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 6e-55 | nuclear factor Y, subunit A7 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G372100.7 |
Entrez Gene | 7487567 |
Publications ? help Back to Top | |||
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