PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G352400.1 | ||||||||
Common Name | POPTR_0001s34520g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 313aa MW: 34893.4 Da PI: 6.7979 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 108.8 | 2.5e-34 | 170 | 227 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+ Potri.001G352400.1 170 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPSIVITTYEGQHNHP 227 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-35 | 154 | 229 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-30 | 161 | 229 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.765 | 164 | 229 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.1E-40 | 169 | 228 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-26 | 170 | 227 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MSNEHRDFYY HTPFQEDHLD VKPPSILGSS TYNRSPGQGL DPSSYMSLTE CLHGSVDYNS 60 LAKAFGLSPS SSEVFSSIEE SSRPVEARDL DGGNSTDQVP ATPNSSVSFS SSEAGGDEDS 120 GKTKKETQPE KPEDGGENSD KKDKAKKKAE KRQKEPRFAF MTKSEVDHLE DGYRWRKYGQ 180 KAVKNSPYPR SYYRCTTQKC TVKKRVERSF QDPSIVITTY EGQHNHPIPT TLRGSASAMF 240 SHSMLAPAPM ASGPSFPHHQ GYNFVQIPDA MNNQNMGAYP QNVNQHVHQQ YQVPDYGLLQ 300 DIVPSIFLRQ EP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-29 | 159 | 229 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 4e-29 | 159 | 229 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G352400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377449 | 0.0 | GQ377449.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 29 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006369893.1 | 0.0 | probable WRKY transcription factor 28 | ||||
Swissprot | Q8VWJ2 | 5e-79 | WRK28_ARATH; WRKY transcription factor 28 | ||||
TrEMBL | U5GX71 | 0.0 | U5GX71_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s34520.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2231 | 34 | 83 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 8e-58 | WRKY DNA-binding protein 71 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G352400.1 |
Entrez Gene | 18095297 |
Publications ? help Back to Top | |||
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