PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G352400.1
Common NamePOPTR_0001s34520g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 313aa    MW: 34893.4 Da    PI: 6.7979
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G352400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.82.5e-34170227259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+
  Potri.001G352400.1 170 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPSIVITTYEGQHNHP 227
                         8********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-35154229IPR003657WRKY domain
SuperFamilySSF1182905.1E-30161229IPR003657WRKY domain
PROSITE profilePS5081132.765164229IPR003657WRKY domain
SMARTSM007744.1E-40169228IPR003657WRKY domain
PfamPF031061.0E-26170227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSNEHRDFYY HTPFQEDHLD VKPPSILGSS TYNRSPGQGL DPSSYMSLTE CLHGSVDYNS  60
LAKAFGLSPS SSEVFSSIEE SSRPVEARDL DGGNSTDQVP ATPNSSVSFS SSEAGGDEDS  120
GKTKKETQPE KPEDGGENSD KKDKAKKKAE KRQKEPRFAF MTKSEVDHLE DGYRWRKYGQ  180
KAVKNSPYPR SYYRCTTQKC TVKKRVERSF QDPSIVITTY EGQHNHPIPT TLRGSASAMF  240
SHSMLAPAPM ASGPSFPHHQ GYNFVQIPDA MNNQNMGAYP QNVNQHVHQQ YQVPDYGLLQ  300
DIVPSIFLRQ EP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-29159229777Probable WRKY transcription factor 4
2lex_A4e-29159229777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G352400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774490.0GQ377449.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 29 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006369893.10.0probable WRKY transcription factor 28
SwissprotQ8VWJ25e-79WRK28_ARATH; WRKY transcription factor 28
TrEMBLU5GX710.0U5GX71_POPTR; Uncharacterized protein
STRINGPOPTR_0001s34520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.18e-58WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]