PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G347200.1
Common NamePOPTR_0001s35140g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 451aa    MW: 50935.7 Da    PI: 6.0138
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G347200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-17212258148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT++Ed llv+ vkq+G + W+ Ia+++  gR +kqc++rw+++l
  Potri.001G347200.1 212 KGQWTPQEDRLLVQSVKQYGIKKWSQIAKMLE-GRVGKQCRERWHNHL 258
                         799*****************************.*************97 PP
2Myb_DNA-binding57.72.8e-18264306145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +++W++eEdell++a+++ G++ W+ Ia++++ gRt++ +k++w+
  Potri.001G347200.1 264 KDAWSEEEDELLINAHREIGNR-WAEIAKRLP-GRTENTIKNHWN 306
                         679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.689207262IPR017930Myb domain
SuperFamilySSF466892.66E-31210305IPR009057Homeodomain-like
SMARTSM007179.3E-16211260IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-28213265IPR009057Homeodomain-like
PfamPF139211.0E-18215272No hitNo description
CDDcd001677.72E-15215258No hitNo description
PROSITE profilePS5129421.306263313IPR017930Myb domain
SMARTSM007174.4E-17263311IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-22266311IPR009057Homeodomain-like
CDDcd001672.10E-13266309No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904095Biological Processnegative regulation of endosperm development
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MELNTMLIDE FPFLSSLLSE YNLNPEGTND FSLEEALSSK GLFYNFHHLG YGHPTNIIPP  60
YLDLDHFTIE GSSQNPFSGI SGTCIDPARL DSLASGFSSH DLNAYTPTVV PLLPAGCGDR  120
LLHGLQRGSV RDHDYQKISG ARSLNQKEMK EQRGFEEIGR TRTANNGVST DEASCVSTED  180
SKHHKQVDHH RKAKKLLLEK DSKVHKKSQV IKGQWTPQED RLLVQSVKQY GIKKWSQIAK  240
MLEGRVGKQC RERWHNHLRP DIKKDAWSEE EDELLINAHR EIGNRWAEIA KRLPGRTENT  300
IKNHWNATKR RQFSRRESGK DLDSKSTLLQ SYIMMVTSSS STQENNEEEK TDDVNSNSPN  360
QNESPGSSST DLEIPYGHGH NNEASKLSFD TNLFNDSYGF MSFLEEMPCS CVVDESNMEF  420
EISGLDSLMK GAEVKKEMDL LEMITQGISH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-442103122104C-Myb DNA-Binding Domain
1msf_C1e-442103122104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00385DAPTransfer from AT3G27785Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G347200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300044.10.0transcription factor MYB118
TrEMBLB9GI430.0B9GI43_POPTR; Uncharacterized protein
STRINGPOPTR_0001s35140.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.16e-70myb domain protein 118