PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G343800.3
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 375aa    MW: 41773.7 Da    PI: 5.2894
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G343800.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.21.6e-32311731128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 
                         lp G++F+P+d +l+ e+L++k++  +    + ++e+i+++d    i++++P +Lp  +k++ ++++fF++++++yatg+rk+r+      
  Potri.001G343800.3  31 LPIGVKFDPSDAQLL-EHLEAKCAVGNskphMFIDEFIPTLDgdkgICYTHPAKLP-GAKKDGNSIHFFHRTNNAYATGQRKRRKihcevg 119
                         699************.99***9887765665444456777766677**********.55678899*******************8677777 PP

                 NAM  78 ..tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                            +  +W++tgk+k+v++ +g ++g+kk++v+y  +++ +k+ k++Wvmh+y+l
  Potri.001G343800.3 120 snEEGVRWHKTGKTKPVMD-NGVQKGCKKIMVLYksSKKGSKPDKSKWVMHQYHL 173
                         6434566************.999***********4434666778*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-3824192IPR003441NAC domain
PROSITE profilePS5100530.95731192IPR003441NAC domain
PfamPF023651.9E-1332173IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MADQLQGKCH DLLLIKSKTV GQIVTQEWPG LPIGVKFDPS DAQLLEHLEA KCAVGNSKPH  60
MFIDEFIPTL DGDKGICYTH PAKLPGAKKD GNSIHFFHRT NNAYATGQRK RRKIHCEVGS  120
NEEGVRWHKT GKTKPVMDNG VQKGCKKIMV LYKSSKKGSK PDKSKWVMHQ YHLGTDEDEK  180
EGEYVVSKIF YQQKQTEKND DNLLIEDNDI LSHQTSPRTP NSNPPNPPRP GKSVMYDDIA  240
NDNITHLAGQ NNEIKEEAPD VPAHVFQLEG DVEFPEWFAG ESQAVENSDF TALDDSLLCN  300
EIFVSAPRVP NNSGVNRVSY TGMAHNTNEV NGNNNEPCGI AELENLELDT PPDFQLADLQ  360
FGSQESILGW LDRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G343800.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298550.30.0SUPPRESSOR OF GAMMA RESPONSE 1 isoform X2
TrEMBLA0A2K2C8450.0A0A2K2C845_POPTR; Uncharacterized protein
STRINGPOPTR_0001s35490.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.12e-70NAC domain containing protein 75