PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G343800.2
Common NamePOPTR_0001s35490g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 396aa    MW: 44197.3 Da    PI: 5.7171
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G343800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.11.9e-32521941128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 
                         lp G++F+P+d +l+ e+L++k++  +    + ++e+i+++d    i++++P +Lp  +k++ ++++fF++++++yatg+rk+r+      
  Potri.001G343800.2  52 LPIGVKFDPSDAQLL-EHLEAKCAVGNskphMFIDEFIPTLDgdkgICYTHPAKLP-GAKKDGNSIHFFHRTNNAYATGQRKRRKihcevg 140
                         699************.99***9887765665444456777766677**********.55678899*******************8677777 PP

                 NAM  78 ..tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                            +  +W++tgk+k+v++ +g ++g+kk++v+y  +++ +k+ k++Wvmh+y+l
  Potri.001G343800.2 141 snEEGVRWHKTGKTKPVMD-NGVQKGCKKIMVLYksSKKGSKPDKSKWVMHQYHL 194
                         6434566************.999***********4434666778*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-3936213IPR003441NAC domain
PROSITE profilePS5100530.95752213IPR003441NAC domain
PfamPF023652.2E-1353194IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MARAWLIDGR SIARKVSRSS AYQIKDCGAN RECPKCHCHI DNSDVTQEWP GLPIGVKFDP  60
SDAQLLEHLE AKCAVGNSKP HMFIDEFIPT LDGDKGICYT HPAKLPGAKK DGNSIHFFHR  120
TNNAYATGQR KRRKIHCEVG SNEEGVRWHK TGKTKPVMDN GVQKGCKKIM VLYKSSKKGS  180
KPDKSKWVMH QYHLGTDEDE KEGEYVVSKI FYQQKQTEKN DDNLLIEDND ILSHQTSPRT  240
PNSNPPNPPR PGKSVMYDDI ANDNITHLAG QNNEIKEEAP DVPAHVFQLE GDVEFPEWFA  300
GESQAVENSD FTALDDSLLC NEIFVSAPRV PNNSGVNRVS YTGMAHNTNE VNGNNNEPCG  360
IAELENLELD TPPDFQLADL QFGSQESILG WLDRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G343800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298550.30.0SUPPRESSOR OF GAMMA RESPONSE 1 isoform X2
TrEMBLA0A2K2C8450.0A0A2K2C845_POPTR; Uncharacterized protein
STRINGPOPTR_0001s35490.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.13e-87NAC domain containing protein 44