PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G336700.1
Common NamePOPTR_0001s36220g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 283aa    MW: 32684.6 Da    PI: 5.1512
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G336700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.4e-131461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd +l + +   G  +W+ +++  g+ R++k+c++rw +yl
  Potri.001G336700.1 14 RGPWTIEEDHKLTNFILNNGIQCWRMVPKLAGLLRCGKSCRLRWINYL 61
                        89******************************99************97 PP
2Myb_DNA-binding55.51.3e-1767110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg +T+ Ed ++++++ +lG++ W++Ia++++ gRt++++k++w++
  Potri.001G336700.1  67 RGGFTKMEDNQIIQLHSRLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                         788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-20564IPR009057Homeodomain-like
PROSITE profilePS5129413.511961IPR017930Myb domain
SuperFamilySSF466892.1E-2811108IPR009057Homeodomain-like
SMARTSM007174.9E-61363IPR001005SANT/Myb domain
PfamPF002492.4E-101461IPR001005SANT/Myb domain
CDDcd001674.54E-41661No hitNo description
PROSITE profilePS5129425.92762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2665116IPR009057Homeodomain-like
SMARTSM007177.3E-1766114IPR001005SANT/Myb domain
PfamPF002498.5E-1667110IPR001005SANT/Myb domain
CDDcd001671.62E-1170110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLTNFIL NNGIQCWRMV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGGF TKMEDNQIIQ LHSRLGNRWS KIASHFPGRT DNEIKNHWNT RIKKKLKVLG  120
LDPVTHKPIE QTEKDVSGEE DETIQESVSL KEQEESLEVK SEDRDQAKSD FVQERDQKLE  180
QDELKILDET DLLKSYEMLC GSLDVGSWIN QETNTSTSYS SQESNNLSAG EFHSIQEDSV  240
SQWIESVDSF LSWDSFSHLD EDLFFLENSQ CNYMTHSAPK RL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-28121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. Strongest expression in the stem. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G336700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298589.10.0myb-related protein 315
SwissprotP813943e-84MYB15_ANTMA; Myb-related protein 315
TrEMBLB9GIZ90.0B9GIZ9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s36220.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.13e-94myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]