PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G329800.1
Common NamePOPTR_0001s33740g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 366aa    MW: 41838.1 Da    PI: 8.6738
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G329800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF497.9e-16952144
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                        ++i n+  r  tf kR++++lKK +  S+LC+++++viif++++
  Potri.001G329800.1  9 ESIRNEKSRMLTFRKRKTTLLKKVSDFSILCGVDACVIIFGPNQ 52
                        689**************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.208161IPR002100Transcription factor, MADS-box
SMARTSM004327.0E-14160IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-7323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-18496IPR002100Transcription factor, MADS-box
CDDcd002662.19E-19569No hitNo description
PfamPF003194.4E-171152IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MVNERIKMES IRNEKSRMLT FRKRKTTLLK KVSDFSILCG VDACVIIFGP NQNDQPAATA  60
ETWPSNSDEV RCIINRYKAC DQPRKCYRGS DYFTAKKKKI DAEFAKLHRQ VLKAKYPAWD  120
DRLSSLSSDQ LRVLLGQLDT KLIETADKTL SIFKEYQYVM DNDASWMQAS SHDVQKCRKR  180
NGNNNDNMDS TDFLQLVSNW KSFEAQPPIP FQPEMSSPMA KLDANSLNQR TYNNGYSTLY  240
SEPKALNVLP PVHYESKQSA YRTPSQTNIT EDAMMKIMSY QSHNNSFGCQ ASSSNNQHLS  300
CNGPLYVNPA PWAWFNNADS SVRSVASTMQ PMQPYKQFPM TSFPQQSLFS EINEFNGNAE  360
FERRD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G329800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300109.10.0agamous-like MADS-box protein AGL103
TrEMBLA0A2K2C7C90.0A0A2K2C7C9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s33740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Representative plantOGRP3677621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-12M-type_MADS family protein