PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G323500.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 499aa    MW: 55700.4 Da    PI: 4.9735
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G323500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.11.5e-071856537
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                         C+ +++k ++l+C+ ++  lC  C +++H++      H
  Potri.001G323500.1 18 PCEFCNSKAAILYCRADSAKLCLPCDQQIHSSntlslkH 56
                        5*****************************775566655 PP
2zf-B_box25.72.4e-0859104341
            zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 
                          ++C+++  ++++++C +++ +lC+dC   +H++       H++ p
  Potri.001G323500.1  59 SQICDNCRAEPASIHCSNDNLFLCQDCDWDSHNSsfsvsslHNRNP 104
                         689*****************************88889999998776 PP
3CCT32.23.8e-124044271639
                 CCT  16 kFeKkirYesRKavAesRpRvKGr 39 
                         +++K+irYesRKa+A++R+RvKGr
  Potri.001G323500.1 404 RYDKRIRYESRKARADTRKRVKGR 427
                         69*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.0E-101461IPR000315B-box-type zinc finger
CDDcd000216.21E-61848No hitNo description
PROSITE profilePS501199.4281961IPR000315B-box-type zinc finger
PROSITE profilePS5011910.23957105IPR000315B-box-type zinc finger
PfamPF006433.1E-559102IPR000315B-box-type zinc finger
CDDcd000216.20E-56188No hitNo description
SMARTSM003360.926299IPR000315B-box-type zinc finger
PROSITE profilePS510178.532389431IPR010402CCT domain
PfamPF062033.1E-7404427IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MEKCLNSKQK KDCFLFLPCE FCNSKAAILY CRADSAKLCL PCDQQIHSSN TLSLKHVRSQ  60
ICDNCRAEPA SIHCSNDNLF LCQDCDWDSH NSSFSVSSLH NRNPVEGFMG CPPVVELASL  120
FGFDFKSDFF VDSDPGSCSF EQEAVNFQDF AVSSDDFSVL SSSGKSRQEV YKQLVEMGKR  180
GMVRVNGDGA ELGPDTPPSR CAVQWNLESL ELENGDEELL HQQTPFTSLL MLPNHVDASE  240
NDCVSDLGFM WDCNYTHQGA QAWDFQLGTS LDCTIPGPQE EGYDVKDPGF MVKNYVDFTE  300
DGAFATQKVL DDGHVTSCCS STCEDNLSKN SCSNQQLSRY KPPTENCNNT PLIGLSPESM  360
PGEPNAHIQV MEQPSLTWFE TLNEVRQKGD AGLFAQNRGN AMLRYDKRIR YESRKARADT  420
RKRVKGRGKP VFLGKASPLM LWPELVVTCN PLDHINGEWS FNKHSLQKSL ERSSYSDRNN  480
ASLSFASTMT VTMLHLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G323500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462788.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A3N7ED730.0A0A3N7ED73_POPTR; Uncharacterized protein
STRINGPOPTR_0001s33080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Representative plantOGRP5453813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.21e-53B-box type zinc finger protein with CCT domain