PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G314800.3
Common NamePOPTR_0001s32200g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 239aa    MW: 25790.2 Da    PI: 7.4533
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G314800.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like34.54.4e-111233355
             G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55
                        +++m+vkgLtl+h+kSHLQkYRl
  Potri.001G314800.3  1 MRTMGVKGLTLYHLKSHLQKYRL 23
                        689*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-10124IPR009057Homeodomain-like
PfamPF143795.1E-2770116IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0010628Biological Processpositive regulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MRTMGVKGLT LYHLKSHLQK YRLGKQSCKE STDNSKDVGI AASVAESQDT GSSTSASSRM  60
IAQDLNDGYQ VTEALRVQME VQRRLHEQLE VQRRLQLRIE AQGKYLQSIL EKACKALNDQ  120
AVATAGLEAA REELSELAIK VSNERAGIAP LDTMKMPSIS ELAAALENKH ASNVPARVGD  180
CSVESCLTST GSPVSPMGVG AQVASTKKRS RPVFGNGDSL PFDGNIQQEV EWTMNNIV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.163920.0bud| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G314800.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1468170.0EF146817.1 Populus trichocarpa clone WS01214_H04 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006369801.11e-175protein PHR1-LIKE 3
SwissprotQ8LAJ71e-92PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLU5GS231e-173U5GS23_POPTR; Uncharacterized protein
STRINGPOPTR_0001s32200.11e-176(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.15e-76G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]