PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G313500.1
Common NamePOPTR_0001s32050g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 301aa    MW: 32479.6 Da    PI: 10.4649
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G313500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-20144193356
                 AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g+
  Potri.001G313500.1 144 YRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRGA 193
                         9*******.**********32....25**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-21143200IPR016177DNA-binding domain
SMARTSM003802.6E-31143206IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-29143200IPR001471AP2/ERF domain
PROSITE profilePS5103222.787143200IPR001471AP2/ERF domain
CDDcd000181.65E-15144201No hitNo description
PRINTSPR003671.3E-10144155IPR001471AP2/ERF domain
PfamPF008476.1E-14144192IPR001471AP2/ERF domain
PRINTSPR003671.3E-10166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MNNQKLLPIP FFPKPETYHL SEMFRLLTEN SSFCGSLLQP QNSFSSPFTS NHYDPSAYFP  60
VSTDISAIVS LPGFIKKPPE TPPVLDGIGA VVGQEVLFGT TNTKNSETSD FASISKRIGS  120
KERKHERGAK RNCANNGVPV QRTYRGVRKR PWGRWSAEIR DRIGRCRHWL GTFDTAEEAA  180
RAYDAAARRL RGAKARTNFE IPPVLPPISS SPSPPNACSS SSLNNAEVKR RTNNSNNKLI  240
GNGGRKCAVV TSVAHLFSNF EGKGTSGGGN VELDLKLATG LGGHHDGNKS AASAPPSMVV  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-161441991571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G313500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2149970.0AC214997.1 Populus trichocarpa clone POP013-F22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300181.10.0ethylene-responsive transcription factor ERF084
TrEMBLB9GGA60.0B9GGA6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s32050.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.13e-22ERF family protein