PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G309100.1 | ||||||||
Common Name | POPTR_0001s31660g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 503aa MW: 57379.4 Da PI: 5.3384 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 94.1 | 1.4e-29 | 42 | 125 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+kqe+laL+++r++m+ +++++ lk+plWeevskk+ e g++rs+k+Ckek+en+ k+++++keg+++r ++ +t+++f+ql+ Potri.001G309100.1 42 RWPKQETLALLKIRSDMDVAFKDSGLKAPLWEEVSKKLNELGYNRSAKKCKEKFENIYKYHRRTKEGRSGR--PNGKTYRFFEQLQ 125 8********************************************************************97..55568******98 PP | |||||||
2 | trihelix | 102 | 4.5e-32 | 339 | 424 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+e+ aLi +r+++e +++++ k+plWee+s+ m++ g+ rs+k+Ckekwen+nk++k++ke++k+r +++s+tcpyf+ql+a Potri.001G309100.1 339 RWPKEEIEALIGLRTKLEFQYEENGPKGPLWEEISASMKKLGYDRSAKRCKEKWENMNKYFKRVKESNKRR-PGDSKTCPYFQQLDA 424 8********************************************************************97.9************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.317 | 35 | 99 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.2E-4 | 39 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 3.5E-20 | 41 | 127 | No hit | No description |
CDD | cd12203 | 2.00E-23 | 41 | 106 | No hit | No description |
SuperFamily | SSF46689 | 4.36E-5 | 335 | 408 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-4 | 336 | 398 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-5 | 337 | 396 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.642 | 338 | 396 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.34E-24 | 338 | 403 | No hit | No description |
Pfam | PF13837 | 3.6E-22 | 339 | 425 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MEASTTFPEN SNAATGNRDS DEGDEEMRVK AEEGDQHSTG NRWPKQETLA LLKIRSDMDV 60 AFKDSGLKAP LWEEVSKKLN ELGYNRSAKK CKEKFENIYK YHRRTKEGRS GRPNGKTYRF 120 FEQLQALDNT EVLLPPPSSD KVHTSMAAAL VNPVSFIPNA VPCSIQSPGM NFVDTTSTST 180 ASTSSEEEEG TRKKKQKLTG FFERLMKEVI EKQENLQNKF LEAIEKCEQE RIAREEAWKM 240 QELDRIKRER ELLVRERAIA AAKDAAVLAF LQKFSEQGIS VQLPDNPIVP MKFPDNQTVP 300 VPSSAPVQLP KNQAVPVENI VKTRENSSIE SFVNISPSRW PKEEIEALIG LRTKLEFQYE 360 ENGPKGPLWE EISASMKKLG YDRSAKRCKE KWENMNKYFK RVKESNKRRP GDSKTCPYFQ 420 QLDALYREKN RRVDGSGFEL KPEELLMHMM GGQGDQQQPE SATTEDRESE NVDQNQENYR 480 DKEDGDGDRI VANDPSSMEI ME* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G309100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024447960.1 | 0.0 | trihelix transcription factor GT-2 | ||||
Swissprot | Q39117 | 1e-126 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | B9GGS3 | 0.0 | B9GGS3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s31660.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 | Representative plant | OGRP663 | 15 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-115 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G309100.1 |
Entrez Gene | 7481619 |