PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G300200.1 | ||||||||
Common Name | POPTR_0001s30750g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 245aa MW: 26529.3 Da PI: 9.6959 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.6 | 6.8e-19 | 7 | 52 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd ll+++v ++G+++W+ Iar ++ gR++k+c++rw + Potri.001G300200.1 7 KGPWSPEEDALLKHLVIKHGPRSWTMIARAVP-GRSGKSCRLRWCNQ 52 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 49.8 | 7.6e-16 | 61 | 102 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T eEd ++++a+ ++G++ W++Iar + gRt++ +k++w++ Potri.001G300200.1 61 AFTREEDVIIINAHIKYGNK-WAAIARLLD-GRTDNAIKNHWNS 102 79******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.452 | 1 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-30 | 4 | 100 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-16 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-17 | 7 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-24 | 8 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.67E-16 | 9 | 51 | No hit | No description |
SMART | SM00717 | 1.3E-13 | 58 | 106 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.487 | 59 | 108 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.7E-13 | 61 | 102 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 61 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.92E-12 | 61 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDCDRVKGPW SPEEDALLKH LVIKHGPRSW TMIARAVPGR SGKSCRLRWC NQLSPVVEHR 60 AFTREEDVII INAHIKYGNK WAAIARLLDG RTDNAIKNHW NSKLKRKYAD FIVHGGMVNE 120 DGVKDKSAKT VSSSSVLERA NTPSGSEVSD AGLPGTSSLL VQENVPVVES GISNNADVST 180 ELTLSVPGMK SGQLGRDHGV GNKGLLTGDA EKTMTFGPKL LAVMQEMIRK EVRDYMVGIG 240 GKSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-36 | 4 | 107 | 4 | 107 | B-MYB |
1gv2_A | 2e-36 | 6 | 107 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 7e-36 | 6 | 107 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 7e-36 | 6 | 107 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-36 | 6 | 107 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-36 | 6 | 107 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G300200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002298748.1 | 1e-180 | transcription factor MYB44 | ||||
TrEMBL | B9GHS7 | 1e-179 | B9GHS7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s30750.1 | 1e-180 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF843 | 34 | 124 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 5e-66 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G300200.1 |
Entrez Gene | 7465045 |