PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G293900.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GeBP
Protein Properties Length: 450aa    MW: 50441.3 Da    PI: 5.6847
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G293900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573124.16.3e-39226321298
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                         lfqrlw+e+Dei+lL+G+idf+ak+g +ps+d++afy+f+kks++f+vs +ql +Ki rLKkKf+++vk  k+g++++fsk+hdqk f+ls
  Potri.001G293900.1 226 LFQRLWTEDDEIALLRGIIDFTAKKGYDPSKDMNAFYDFIKKSLHFDVSMTQLKDKISRLKKKFENHVKG-KKGENKTFSKPHDQKGFDLS 315
                         79******************************************************************99.99****************** PP

              DUF573  93 kkiWgs 98 
                         k+iWgs
  Potri.001G293900.1 316 KSIWGS 321
                         ****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-34227320IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MESENSNKGY CLNNQSKRKS AVTVSAFLLN ALEDGFSTFP RTLPSLLCSC CESKYLSIKT  60
LKTIPVTLSM APKRPPPVED PPSASISEEE EEEDSSSAEE EEEQQQSDGE QRQPSPPQPQ  120
NKTQNPPHKI TETTTQQSES DSESESASES EPDQIVKPIT SKPMEETPPK AASAASKKPR  180
SKPATAATPE KTTALKRGNE TDREDSKRAK NKEPDPEKPE DSKKQLFQRL WTEDDEIALL  240
RGIIDFTAKK GYDPSKDMNA FYDFIKKSLH FDVSMTQLKD KISRLKKKFE NHVKGKKGEN  300
KTFSKPHDQK GFDLSKSIWG SDGSIKDNGR KNDSGNTSNN NKTGNAKKPE ASKPELGMDV  360
GEEDRVEVEM ARGSSVKSVL KFDSNVSVER MEDYVVRMGL NFVHGTEKEK MEEEWRKLHV  420
AELELFLKRN ELIREQAKLM LTAFKAEKD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G293900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300270.10.0GLABROUS1 enhancer-binding protein-like
TrEMBLA0A3N7EK520.0A0A3N7EK52_POPTR; Uncharacterized protein
STRINGPOPTR_0001s30110.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Representative plantOGRP4222523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.13e-39DNA-binding storekeeper protein-related transcriptional regulator