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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Potri.001G280000.1 | ||||||||
| Common Name | POPTR_0001s28690g | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family | G2-like | ||||||||
| Protein Properties | Length: 365aa MW: 40494.9 Da PI: 9.6253 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 95.9 | 3.1e-30 | 62 | 115 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
prlrW p+LH +Fv+ave+LGG e+AtPk +l+lm++kgL+++hvkSHLQ+YR+
Potri.001G280000.1 62 PRLRWIPDLHLCFVQAVERLGGYERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 115
8****************************************************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 2.6E-28 | 58 | 116 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 10.584 | 58 | 118 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 1.08E-12 | 60 | 116 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 1.9E-21 | 62 | 117 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 1.3E-6 | 63 | 114 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 365 aa Download sequence Send to blast |
MKLGSDQKGD GLMMDASGKS KDGEGDNESK TKNSASSSNS IVDESEKASS SGVRPYVRSK 60 VPRLRWIPDL HLCFVQAVER LGGYERATPK LVLQLMNIKG LSIAHVKSHL QMYRSKKIDD 120 QGQVINSRGD LIGSSGYFSH NFWQHSLLPN IDHNRSSDFR SRSVSRSTGH GNWITSPSVL 180 VPDSMNIRSG AGFYNSISER IDGESGSSTR QGPFHTCNNS TFNDQRRKIK QEFLETESHQ 240 PMYNGNSIQG QISSTTKQPY FAAQFSKRGG DTYNESISLE TKWSFNAEKS NKAKRKADDL 300 DLSLSLSTRS KEKEVRRSLS WDEDDEGSNL SLSLSSTSTK ESNSIYLSMP SKYPKLASTL 360 DLTM* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 5e-17 | 63 | 117 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 5e-17 | 63 | 117 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 3e-17 | 63 | 117 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 3e-17 | 63 | 117 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 3e-17 | 63 | 117 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 3e-17 | 63 | 117 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 5e-17 | 63 | 117 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 5e-17 | 63 | 117 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 5e-17 | 63 | 117 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 5e-17 | 63 | 117 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 5e-17 | 63 | 117 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 5e-17 | 63 | 117 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Potri.001G280000.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AC210342 | 1e-79 | AC210342.1 Populus trichocarpa clone POP091-B06, complete sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002299997.1 | 0.0 | probable transcription factor KAN2 isoform X2 | ||||
| TrEMBL | B9GGQ9 | 0.0 | B9GGQ9_POPTR; Uncharacterized protein | ||||
| STRING | POPTR_0001s28690.1 | 0.0 | (Populus trichocarpa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF16555 | 4 | 9 | Representative plant | OGRP285 | 15 | 123 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G38300.1 | 2e-41 | G2-like family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Potri.001G280000.1 |
| Entrez Gene | 7487815 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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