PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G276200.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

SRS

Protein Properties

Length: 368aa MW: 38670.6 Da PI: 8.2964

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G276200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	210.4	4.7e-65	141	300	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 s t++C+dCGnqakkdC+h+RCRtCCksrgfdCathvkstWv+aa+rrerq a+a a ++ +++ sk++r +++++++s+t++s+ Potri.001G276200.1 141 SATTTCEDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVAAARRRERQLI-ATAGGGAGSTGSTSGSKKPRLI-NSQATTTSHTSTSN 229 57899******************************************9655.4555666777788999999975.788899999* PP DUF702 94 aeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++++ +tss lP +v ++avfrcvrv++v+dge+++aYq++v+igGhvfkG+LydqG+e+ Potri.001G276200.1 230 TTPPRSYDTSSshqdagfkerLPVQVTAPAVFRCVRVTAVEDGEDQYAYQAVVKIGGHVFKGFLYDQGVET 300 ****9999******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.5E-60	143	299	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.3E-25	145	187	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	7.3E-29	250	298	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MVGLRDVFVV APAAPFNHHH HHHHQHHEQI NLSTADPINA SNATALGVGV GVGVIPLLTS 60 APCLTPQNMD DQDLLHNGRN KISGIHQFWQ NQGTQYIKKA SDTTHSIIDH HNNSSTANFL 120 LQSGNGGGNG SGNLGGNSSS SATTTCEDCG NQAKKDCSHR RCRTCCKSRG FDCATHVKST 180 WVAAARRRER QLIATAGGGA GSTGSTSGSK KPRLINSQAT TTSHTSTSNT TPPRSYDTSS 240 SHQDAGFKER LPVQVTAPAV FRCVRVTAVE DGEDQYAYQA VVKIGGHVFK GFLYDQGVET 300 RDGFPNISEL HLGAANGGGG GGAGRHGASS SPILDPSDVY GASAGGLLGG RRAVIDVECP 360 WYKTETR*

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MVGLRDVFVV APAAPFNHHH HHHHQHHEQI NLSTADPINA SNATALGVGV GVGVIPLLTS  60
APCLTPQNMD DQDLLHNGRN KISGIHQFWQ NQGTQYIKKA SDTTHSIIDH HNNSSTANFL  120
LQSGNGGGNG SGNLGGNSSS SATTTCEDCG NQAKKDCSHR RCRTCCKSRG FDCATHVKST  180
WVAAARRRER QLIATAGGGA GSTGSTSGSK KPRLINSQAT TTSHTSTSNT TPPRSYDTSS  240
SHQDAGFKER LPVQVTAPAV FRCVRVTAVE DGEDQYAYQA VVKIGGHVFK GFLYDQGVET  300
RDGFPNISEL HLGAANGGGG GGAGRHGASS SPILDPSDVY GASAGGLLGG RRAVIDVECP  360
WYKTETR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.8720	0.0	bud\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269\|PubMed:7647564}.
Uniprot	TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269\|PubMed:7647564}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G276200.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024452930.1	0.0	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	4e-86	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2K2C4Q5	0.0	A0A2K2C4Q5_POPTR; Uncharacterized protein
STRING	POPTR_0001s28290.1	1e-179	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51
Representative plant	OGRP1313	15	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	1e-72	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Potri.001G276200.1

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]