PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G270000.1
Common NamePOPTR_0001s27680g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 414aa    MW: 45737.8 Da    PI: 9.4213
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G270000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.87.8e-08348393655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+el P      +k  s a+ L + +e Ik+Lq
  Potri.001G270000.1 348 SIAERVRRTRISERMRKLQELFPDM----DKQTSTADKLDLSIELIKDLQ 393
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.468342392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-11345404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.12E-7346397No hitNo description
Gene3DG3DSA:4.10.280.101.6E-10347404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-4348393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-5348398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MSLLYSPSFN YSDGELRKSQ EFMDLNLYHY HHQQQQQIQQ NSGLKSYRSA PSSFLESLVN  60
GTSGHNGGNG GVGSEDYRYL RSSSPGMDTM LKRPMSSCNG SGDFNSQNLQ EFEERPAIRQ  120
EQEDSEMVYR SLPGHNLVKG NSVSVGNSLD SAFSVMNSMD LENSKQATKM STRNGSNLAR  180
QNSSPAGILS NHGVDNGFAV MRNAGSFRAG NGTNGEATPS TSRLRSHVNF SSGHRTLPQI  240
AEIGEECIGG SSPEGDFSKR KYMYNFNSDT WGDASRLKDN DGNMFSGLNR RESQVGNSGN  300
RMTGLTHHLS LPKTVAEMAT AEKFLDFQGN FVPCKIRAKR GFATHPRSIA ERVRRTRISE  360
RMRKLQELFP DMDKQTSTAD KLDLSIELIK DLQKQVKSLA DTKAKCTCSS KQK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G270000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298446.10.0transcription factor bHLH130
RefseqXP_024441264.10.0transcription factor bHLH130
TrEMBLB9GFQ90.0B9GFQ9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s27680.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-61bHLH family protein