PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G267900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 401aa MW: 44879 Da PI: 8.0355 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.6 | 2.5e-06 | 240 | 259 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r nL+ H+ Potri.001G267900.1 240 FSCPLCSKTFNRYNNLQMHM 259 89*****************9 PP | |||||||
2 | zf-C2H2 | 15.4 | 5.3e-05 | 324 | 346 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ Potri.001G267900.1 324 FMCRKCGKPFAVKGDWRTHEKNC 346 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.36E-5 | 234 | 262 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.4E-5 | 240 | 259 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.049 | 240 | 262 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.783 | 240 | 267 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 242 | 262 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.1E-6 | 308 | 344 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 320 | 344 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 72 | 324 | 344 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 150 | 350 | 373 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MPKELLVVSG KIILKTDKNN NNKNRMFPLS FSEDPQFTFC AIYTTTVPLL AKVPNQPILS 60 LAPFTMADPC SNLFSTGSFN FVLLNPHYST AFTSYSNPSS LHAFSNNYSL DNKSSIPPSS 120 PPPKEALPLI EYLSPARQQE EHRDSSCSSM EEDKNMKKDD DNLFFSTADG NVEPVTVALH 180 IGLPNPSSDL EIRALRVFPS PNAPDKGEMS AVSGYPLEKL NKGQYWIPTP SQILIGPSQF 240 SCPLCSKTFN RYNNLQMHMW GHGSQYRKGP DSLRGTQPTA MLRLPCYCCA TGCKHNIDHP 300 SARPLKDFRT LQTHYKRKHG IKPFMCRKCG KPFAVKGDWR THEKNCGKIW YCICGSDFKH 360 KRSLKDHIKA FGHGHVGIDC FEEEDELASE STEHDGESCM * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G267900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208479 | 1e-162 | AC208479.1 Populus trichocarpa clone JGIACSB1081-D15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002298437.2 | 0.0 | zinc finger protein WIP2 | ||||
Swissprot | Q9SVY1 | 1e-116 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A3N7ECC8 | 0.0 | A0A3N7ECC8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s27490.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 | Representative plant | OGRP410 | 15 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-113 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G267900.1 |
Publications ? help Back to Top | |||
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