PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G266000.3
Common NamePOPTR_0001s27300g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YA
Protein Properties Length: 314aa    MW: 34482.2 Da    PI: 7.8888
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G266000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.81.3e-31169225158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep+YVNaKQ+++I++RRq+Rak+e ekk   k rkpylheSRh+hA+rR+Rg+gGrF
  Potri.001G266000.3 169 EEPVYVNAKQFNGIMRRRQARAKAELEKKA-VKVRKPYLHESRHQHAMRRARGCGGRF 225
                         69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.6E-36167228IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.536168228IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.4E-28170225IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.9E-23171193IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860173193IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.9E-23202225IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MMPAKSEKED RRLDHSGQSL FQSNVYSQPW WREVGNNPSL GETASKLSSV ENLNGSLLNA  60
VTQSKVNTGL QKGAILNKDT QTDVTSLSDE GTGQHHLNHV PSPTTVTMDG HLEPNSQMEL  120
VGHSIVLTSH PYTDPQYGGI FASYRPQAMV PQFYGMTHAR MPLPLEMEEE PVYVNAKQFN  180
GIMRRRQARA KAELEKKAVK VRKPYLHESR HQHAMRRARG CGGRFLNTKK LDHNAANPTS  240
DKGTGDLDSS GDLQEGKESM VQDMQTHASS NCHGNGNGLS SRYHSLSDDG SFLGQQKETT  300
HGNGVSNGNV SIY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-19169232265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.182500.0bud| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G266000.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ9144400.0HQ914440.1 Populus euphratica CCAAT-binding transcription factor subunit B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299939.20.0nuclear transcription factor Y subunit A-1
TrEMBLB9GFD80.0B9GFD8_POPTR; NF-YA family protein
STRINGPOPTR_0001s27300.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.45e-27nuclear factor Y, subunit A1