PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G257600.2
Common NamePOPTR_0001s26480g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YA
Protein Properties Length: 349aa    MW: 38440.7 Da    PI: 7.3157
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G257600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA97.51.4e-30169225158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep+YVNaKQy +I++RRq+Rak+e ekkl +ksrkpylheSRh+hA+rR+R+sgGrF
  Potri.001G257600.2 169 QEPVYVNAKQYPGIIRRRQQRAKAEVEKKL-IKSRKPYLHESRHQHAIRRERSSGGRF 225
                         69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.3E-33167228IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.526168228IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.5E-26170225IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.0E-21171193IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860173193IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.0E-21202225IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MRSKPENTNG LDADLKDIEY TVNSEPWWRN IGYSSIPPAM TGGNASNLTT PEGHNGSESN  60
DDQSLSSGRL NEEDADANKD SQATASSQLG NGLHYQNLQS VVSSMTRTHD GLSQSPQFEL  120
VSHSIACASN PYQDAYYSGM MAYGHQPLGY PHFVGMPHAR MLLPLEVAQE PVYVNAKQYP  180
GIIRRRQQRA KAEVEKKLIK SRKPYLHESR HQHAIRRERS SGGRFAKKSG DDASKNTSER  240
KLNGSGPLRA SQSGSSSGSE PFSSDSVETL KSSDGQKEAR ASQVHDTFEA YGYANRDGHY  300
QNHHGLQSST YGLYLGENKD GDRSRENEDE DHPGRQLRKQ AKTSSAHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-16169225258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G257600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2283820.0CU228382.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299906.10.0nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_024453865.10.0nuclear transcription factor Y subunit A-1 isoform X1
SwissprotQ9LXV53e-70NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLB9GF010.0B9GF01_POPTR; NF-YA family protein
STRINGPOPTR_0001s26480.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.47e-70nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]