PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G256600.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 442aa MW: 49960.7 Da PI: 5.72

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G256600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	144.5	5.7e-45	50	188	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ppG+rF+P+d+elv +yL kkv+g +l++ + i ++d+y+++P+dL + +++ekewyfF++r++ky++g+r+nra+ gyWkatg dk Potri.001G256600.1 50 PPGYRFRPHDHELVLHYLDKKVKGLPLPM-NRIINADLYQFDPEDLAaQYSHHGEKEWYFFTPRNRKYKNGTRPNRAAGGGYWKATGADKG 139 9**************************.668899******9556666889********************************* PP NAM 92 vlsk............kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + +++lvg +k Lv+y g+ pkg kt+W+mhe+rl Potri.001G256600.1 140 ITYEkrvieagkkityQKTLVGHRKALVYYAGKPPKGDKTNWIMHEFRL 188 9986677666555555555**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.67E-52	46	215	IPR003441	NAC domain
PROSITE profile	PS51005	51.231	49	215	IPR003441	NAC domain
Pfam	PF02365	7.0E-24	50	188	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MASNSSPPPV PQPPTMNPPF QALSTPTPRP PPPQRFANYE DSDRYFNSFP PGYRFRPHDH 60 ELVLHYLDKK VKGLPLPMNR IINADLYQFD PEDLAAQYSH HGEKEWYFFT PRNRKYKNGT 120 RPNRAAGGGY WKATGADKGI TYEKRVIEAG KKITYQKTLV GHRKALVYYA GKPPKGDKTN 180 WIMHEFRLDD SPLHVRNNRD DMRLDDCVLC RIYKKREKST TNASTNVRNR QSNEENPLLT 240 IDDDDEDYIN DHDYDPNHLS AIEASFAGEI YGMVTNSLEN SFPILDELSQ QQTGTSIFPD 300 ANNFFMFQDS QIPGLEETFG TPAPMDSVNP EDWSSEQMGL QDEFLNPTYS SPFNIPDHFF 360 NLYSIMPTNL PMNPSPHVNI CPMNTAPIRS LPPMNTAPST GDLPPINTDP LAAPFPPANS 420 QPTSEIMNAA PNHPGQPPQH R*

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MASNSSPPPV PQPPTMNPPF QALSTPTPRP PPPQRFANYE DSDRYFNSFP PGYRFRPHDH  60
ELVLHYLDKK VKGLPLPMNR IINADLYQFD PEDLAAQYSH HGEKEWYFFT PRNRKYKNGT  120
RPNRAAGGGY WKATGADKGI TYEKRVIEAG KKITYQKTLV GHRKALVYYA GKPPKGDKTN  180
WIMHEFRLDD SPLHVRNNRD DMRLDDCVLC RIYKKREKST TNASTNVRNR QSNEENPLLT  240
IDDDDEDYIN DHDYDPNHLS AIEASFAGEI YGMVTNSLEN SFPILDELSQ QQTGTSIFPD  300
ANNFFMFQDS QIPGLEETFG TPAPMDSVNP EDWSSEQMGL QDEFLNPTYS SPFNIPDHFF  360
NLYSIMPTNL PMNPSPHVNI CPMNTAPIRS LPPMNTAPST GDLPPINTDP LAAPFPPANS  420
QPTSEIMNAA PNHPGQPPQH R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-49	48	219	16	169	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-49	48	219	16	169	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-49	48	219	16	169	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-49	48	219	16	169	NO APICAL MERISTEM PROTEIN
3swm_A	2e-49	48	219	19	172	NAC domain-containing protein 19
3swm_B	2e-49	48	219	19	172	NAC domain-containing protein 19
3swm_C	2e-49	48	219	19	172	NAC domain-containing protein 19
3swm_D	2e-49	48	219	19	172	NAC domain-containing protein 19
3swp_A	2e-49	48	219	19	172	NAC domain-containing protein 19
3swp_B	2e-49	48	219	19	172	NAC domain-containing protein 19
3swp_C	2e-49	48	219	19	172	NAC domain-containing protein 19
3swp_D	2e-49	48	219	19	172	NAC domain-containing protein 19
4dul_A	2e-49	48	219	16	169	NAC domain-containing protein 19
4dul_B	2e-49	48	219	16	169	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G256600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024452071.1	0.0	protein ATAF2
TrEMBL	A0A3N7EC69	0.0	A0A3N7EC69_POPTR; Uncharacterized protein
STRING	POPTR_0001s26380.1	1e-147	(Populus trichocarpa)
STRING	POPTR_0009s05690.1	1e-147	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10112	16	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	2e-57	NAC domain containing protein 47

Link Out ? help Back to Top
Phytozome	Potri.001G256600.1