PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G250000.1 | ||||||||
Common Name | POPTR_0001s25710g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 490aa MW: 54250.8 Da PI: 7.7944 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.3 | 1.5e-17 | 137 | 183 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+++vkq+G + W+ Ia+++ gR +kqc++rw+++l Potri.001G250000.1 137 KGQWTEEEDRKLIRLVKQFGVRKWAQIAEKLD-GRAGKQCRERWHNHL 183 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 48 | 3e-15 | 198 | 240 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++eE+ + v a+++ G++ W+ Ia+ ++ gRt++ +k++w+ Potri.001G250000.1 198 KDSWSEEEERIMVGAHAKVGNR-WAEIAKLIP-GRTENAIKNHWN 240 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.177 | 132 | 187 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.95E-29 | 135 | 239 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-17 | 136 | 185 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-16 | 137 | 183 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-24 | 138 | 189 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.45E-16 | 140 | 183 | No hit | No description |
PROSITE profile | PS51294 | 18.547 | 193 | 247 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-13 | 197 | 245 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-16 | 197 | 245 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-13 | 198 | 240 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.25E-10 | 200 | 243 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MEGGGRVGGR LGNRNWQNNR PNIYPPLTAR DRFLFGQSHF TPHQNIQNND KNKETTVSNN 60 GSCGFYPPSG AIGAVPWQSI QETSFVDGAI GVGGDDLNWT YEGNPNGGLN GKVSVSGKSY 120 KGIGKKTKKG SCATLIKGQW TEEEDRKLIR LVKQFGVRKW AQIAEKLDGR AGKQCRERWH 180 NHLRPDIKVS SPFTSSRKDS WSEEEERIMV GAHAKVGNRW AEIAKLIPGR TENAIKNHWN 240 ATKRRQNSRR KHKQKESKSG KTQSSILQDY IRSKNLKNAS TSTQSTTTTT NTPSSSISEE 300 PSSQNNYFLP ELSESNTDDS PSLLAQACSD DELMFIQNFF ANKSKDPSTD KADMENPIME 360 VNSFNADLFN DSLSLDSWGS YQNNGGQQLN DGNENGFVSS SLNPKLCTNG FQGAEDHTPP 420 HNHLHSDLYL SYLLNGASSA PCSSSTEYGY NSMNLDLEMD QTDSLNGKKE MDLIEMLCSS 480 QFSQGCNKM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 5e-43 | 135 | 246 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 5e-43 | 135 | 246 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G250000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024436646.1 | 0.0 | transcription factor MYB119 | ||||
TrEMBL | B9GIJ3 | 0.0 | B9GIJ3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s25710.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4129 | 31 | 58 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 5e-65 | myb domain protein 119 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G250000.1 |
Entrez Gene | 7468002 |