PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.001G243600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 391aa MW: 43710 Da PI: 5.9572 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.9 | 5.2e-29 | 166 | 219 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv++v +L G ++A+Pkti++ m+v+gLt+e+v+SHLQkYRl Potri.001G243600.1 166 RPRLVWTPQLHKRFVDVVGHL-GMKNAVPKTIMQWMNVEGLTRENVASHLQKYRL 219 59*******************.9*******************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.24E-19 | 163 | 223 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-28 | 165 | 223 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-22 | 167 | 219 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.0E-7 | 169 | 218 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 391 aa Download sequence Send to blast |
MGEEVKMSEY EINDEDNINR DDERIDVWEM GLPTPYDLTP LSQLLIPPEL ASAFNISPEP 60 HRTPLDVNRA SQNTLSNLHG HLNALSSNNF KSFNETTGQT HDPMVVELEE EEEEEEEDVT 120 EAMDRDGSGS EARKLRRIDS EEADSALRTE NWVDDPSSAA ARTLKRPRLV WTPQLHKRFV 180 DVVGHLGMKN AVPKTIMQWM NVEGLTRENV ASHLQKYRLY LKRKQGLSSE GPSASDQLFA 240 STPVPQSLHE SGGGSCGGGN FGMPIPMPYH HPATTAGGMM PMPVYGHMGI QMVNDHVHNN 300 NNSNNYQHQQ VSMNSHQNGY NGNVALLMGN KHVHNSSNKH QHQQVSTNSH QNGYNGNVAY 360 GHMFQQRDWN GTNYGPYSHH PHHAVSNDNM * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-31 | 166 | 222 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:21236673, ECO:0000269|PubMed:21753751, ECO:0000269|PubMed:22311777}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.001G243600.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:17132630, ECO:0000269|PubMed:21753751}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC215850 | 0.0 | AC215850.1 Populus trichocarpa clone POP025-N09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024450865.1 | 0.0 | transcription factor BOA | ||||
Swissprot | Q9SNB4 | 4e-78 | PCL1_ARATH; Transcription factor LUX | ||||
TrEMBL | A0A2K2C2Z1 | 0.0 | A0A2K2C2Z1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s25040.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6957 | 33 | 47 | Representative plant | OGRP1157 | 17 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G46640.2 | 3e-75 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.001G243600.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|