PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G242100.1
Common NamePOPTR_0001s24890g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 713aa    MW: 80600.9 Da    PI: 5.4043
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G242100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS375.47.4e-1153387082374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lL++cA+av+ gd++ a++lL+++++++sp gd++qRla+yf++AL +rla++++ +++ +++ +   ++ +e+++a+++++ ++P+ +
  Potri.001G242100.1 338 SSLLTQCAQAVAIGDQRTASELLKQIRQHSSPFGDANQRLAHYFANALDTRLAGTMTPTFAPIASHR---TSAAESVKAYQVYVRACPFKR 425
                         689***************************************************6666665555555...559****************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         +s++ aN++Il+ +++++r+HiiDf+i +G+QWp+L+q L++Rp+gpp+lRiTg++ p+++   +e++eetg+rL+k++e+++vpfe+++ 
  Potri.001G242100.1 426 MSNFFANRTILKLAKKATRLHIIDFGILYGFQWPCLIQRLSERPGGPPRLRITGIELPQPDfrPAERVEETGRRLEKYCERFKVPFEYDA- 515
                         ************************************************************9*****************************. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         +a+++e++++e+Lr++++E+++Vn+ ++l +l+d++v  +s+rd+vLkl+++++P+++++   +   n++ F++rf eal++ys+lfd++e
  Potri.001G242100.1 516 IAQKWETIRYEDLRIDEDEMIVVNSLYRLRNLPDDTVVENSARDAVLKLINKIKPDMFIHGVVNGAFNAPYFVTRFREALYHYSSLFDMFE 606
                         7****************************************************************************************** PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         a+++re+e+r+  E+e  grei nv+aceg++r+er et+++W++r  +aGF++++l+ +  k+++++++  + + + v+ + +++++gWk
  Potri.001G242100.1 607 ANVSREDENRMLFEKERYGREIINVIACEGTSRVERPETYKQWQSRNLRAGFRQLTLDPELFKDVRSVVKSEYHKDFVVDADGQWMLQGWK 697
                         ***********************************************************************99888*************** PP

                GRAS 364 drpLvsvSaWr 374
                         +r + ++S+W+
  Potri.001G242100.1 698 GRIIHALSVWE 708
                         **********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.858311688IPR005202Transcription factor GRAS
PfamPF035142.6E-112338708IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MNNLFQEYPN SMNRFVFDHA SVSFSPNRDL VNGYKLNDTL SSPNPSFNYF NPESPSDSTS  60
SSSSSNSCSE VYGPSNNVTL KFISDVLLEE DLEGKTCMLQ DCLTLQAAEK SLYDVLGQEY  120
PHSSNQILSC FNQNVESPND GVTWINNTGS TNGYHTANNL VEKSDWIFDQ ADLELSQVPQ  180
SSPVLSLEKT PLGTDFQGPA HPYEMLSKGE GEAGISLSTS DYLMSSPERS SSNPPDKEER  240
GYSPNSSRGR KNHQREDSDD LEEERGKKHS ALSPAESEQS ELFDEVLLCS GAQNVSASCA  300
LLDKSQNGAG RNEQRKGSNG RAARAKRKEN KEEVVDLSSL LTQCAQAVAI GDQRTASELL  360
KQIRQHSSPF GDANQRLAHY FANALDTRLA GTMTPTFAPI ASHRTSAAES VKAYQVYVRA  420
CPFKRMSNFF ANRTILKLAK KATRLHIIDF GILYGFQWPC LIQRLSERPG GPPRLRITGI  480
ELPQPDFRPA ERVEETGRRL EKYCERFKVP FEYDAIAQKW ETIRYEDLRI DEDEMIVVNS  540
LYRLRNLPDD TVVENSARDA VLKLINKIKP DMFIHGVVNG AFNAPYFVTR FREALYHYSS  600
LFDMFEANVS REDENRMLFE KERYGREIIN VIACEGTSRV ERPETYKQWQ SRNLRAGFRQ  660
LTLDPELFKD VRSVVKSEYH KDFVVDADGQ WMLQGWKGRI IHALSVWEPV QE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-513217093380Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G242100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2308540.0CU230854.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299863.10.0scarecrow-like protein 14
TrEMBLA0A385JHP50.0A0A385JHP5_POPTO; SCARECROW-like 14
TrEMBLB9GJL60.0B9GJL6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s24890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein