PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G241800.1 | ||||||||
Common Name | POPTR_0001s24860g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 796aa MW: 89264.6 Da PI: 4.7687 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 374.7 | 1.2e-114 | 418 | 792 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL+ cA+avs++d++ a++lL+++++++s+ gd +qRla++f+++L+arla+s++++ + ++ ++++++ ++ l+a+k+ +++P+ Potri.001G241800.1 418 LRTLLILCAQAVSANDFRTANELLKQIRQHSSQFGDGTQRLAHFFANGLEARLAGSGDGTRSFFTHLASKRTTAADMLKAYKTNLQACPFK 508 5789*************************************************************************************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 kfs + a ++Il+a+e+++++Hi+Df++ +G+QWp L+q+L+ p+gpp+lR+Tg++ p++g +e++eetg+rLak++e+++vpfe+n+ Potri.001G241800.1 509 KFSIFFAISMILQAAEKASTLHIVDFGVLYGFQWPILIQQLSLLPNGPPKLRLTGIELPQHGfrPSERIEETGRRLAKYCERFKVPFEYNP 599 *************************************************************9***************************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 ++a+++e + +e+L+++++E+laV+++ + ++l+de+v+++ +++++L+l+++++P+++v++ + ++n++ Fl+rf eal ++s+lfd++ Potri.001G241800.1 600 IAAQNWERIPIEDLKINRNEVLAVHCQCRFKNLFDETVEVDCPKNAILNLIRKMNPDIFVHTIINGSYNAPFFLTRFREALFHFSSLFDMF 690 ******************************************************************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 +++lpre+++ri+ E el gr+++nvvaceg+er+er et+++W++r +aGFk++pl++k +++ + l++++ + + ++e+++++++gW Potri.001G241800.1 691 DSTLPREDQARIMFEGELYGRDAMNVVACEGQERVERPETYKQWQARTVRAGFKTLPLEQKLMTKFRGKLKTYYHKDFVIDEDNDWMLQGW 781 **************************************************************************889************** PP GRAS 363 kdrpLvsvSaW 373 k+r +++ S+W Potri.001G241800.1 782 KGRIIYASSCW 792 *********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.001 | 392 | 773 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.2E-112 | 418 | 792 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 796 aa Download sequence Send to blast |
MDQNYTGLHD RFQNDSKFDE TIMLPNSEQY PNIEHGLEFN IPSPDLSFMN LPFDPPDTDP 60 DRFGLSFNSS PGVESFVPSM SLSPDGEALD PSSAWSPEAE ASSPSEDSDS SDPLLKYISQ 120 MLMEENMEDQ PHMFHDHFAL STTEKSLYDV LGEQYPSSLD SPESYVNLES PDSIFLASGS 180 NCGDNTSKST STGTTSGTID SAKETQWVGG DVGGMNPSFS RTPLPDDNHL HSNFQPNVQF 240 TGNPSNGFTD TGDGLMGSSA GEMVQNMFSD AESVLQFKRG LEEASKFLPI ASQLVIDLET 300 NAVSSRQKED APIVVVKEEN SERDSSPDGS RGRKNHERED PDLEEGRRNK QSAVHVEESE 360 LSEMFDKVLL WTGGQCCGDD AVQDVASKNS QPDEQSNGSS GGKTRAKRQN KKKETVDLRT 420 LLILCAQAVS ANDFRTANEL LKQIRQHSSQ FGDGTQRLAH FFANGLEARL AGSGDGTRSF 480 FTHLASKRTT AADMLKAYKT NLQACPFKKF SIFFAISMIL QAAEKASTLH IVDFGVLYGF 540 QWPILIQQLS LLPNGPPKLR LTGIELPQHG FRPSERIEET GRRLAKYCER FKVPFEYNPI 600 AAQNWERIPI EDLKINRNEV LAVHCQCRFK NLFDETVEVD CPKNAILNLI RKMNPDIFVH 660 TIINGSYNAP FFLTRFREAL FHFSSLFDMF DSTLPREDQA RIMFEGELYG RDAMNVVACE 720 GQERVERPET YKQWQARTVR AGFKTLPLEQ KLMTKFRGKL KTYYHKDFVI DEDNDWMLQG 780 WKGRIIYASS CWVPA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-49 | 401 | 794 | 1 | 379 | Protein SCARECROW |
5b3h_D | 2e-49 | 401 | 794 | 1 | 379 | Protein SCARECROW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G241800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208932 | 0.0 | AC208932.1 Populus trichocarpa clone JGIACSB1081-D10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024467558.1 | 0.0 | scarecrow-like protein 33 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A2K2C2W0 | 0.0 | A0A2K2C2W0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s24860.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 | Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G241800.1 |
Entrez Gene | 7485697 |
Publications ? help Back to Top | |||
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