PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G241700.1 | ||||||||
Common Name | POPTR_0001s24850g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 758aa MW: 85387.9 Da PI: 4.89 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 367.3 | 2.1e-112 | 384 | 754 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL+ cA+avss+d ++a++lL+++++++sp gd qRla +f+++L+arla++++++y al++++ s ++ l+a+++++ ++P+ Potri.001G241700.1 384 LRTLLVLCAQAVSSNDRRAANELLKQIRQHSSPLGDGSQRLANCFANGLEARLAGTGTQIYTALSTEKWS---AVDMLKAYQAYVSACPFK 471 5789***********************************************************9999998...9***************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 k++ + aN+ I++ +e+++++HiiDf+i +G+QWp+L+ L+ Rp+gpp lRiTg++ p+sg +e+++etg+rL k++e+ +vpfe+n+ Potri.001G241700.1 472 KMAIIFANHNIMKVAEKASTLHIIDFGILYGFQWPPLIYRLSRRPGGPPILRITGIELPQSGfrPAERVQETGRRLVKYCERYNVPFEYNP 562 *************************************************************9***************************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +a++++++++++L+++++E+laVn+ ++ ++llde+v ++s+r++vL+l+ +++P++++++ + ++n++ F++rf e+l ++salfd+l Potri.001G241700.1 563 -IAQKWDTIQIDDLKINHDEVLAVNCLFRFKNLLDETVVVNSPRNAVLNLISKTKPDIFIHAIVNGSYNAPFFVTRFRETLFHFSALFDML 652 .7***************************************************************************************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 ++++pre+e r k E+e+ gre++nv+aceg+er+er et+++W+ r ++aG+k++pl+ ++ k k+ ++ + + ++v+ + +++ +gW Potri.001G241700.1 653 DSNMPREDEMRLKFEKEFYGREVMNVIACEGSERVERPETYKQWQVRNMRAGLKQLPLDPHVIKYLKCKVKVRYHEDFEVDGDGHWMRQGW 743 ***********************************************************************999899************** PP GRAS 363 kdrpLvsvSaW 373 k+r++++ SaW Potri.001G241700.1 744 KGRTIIASSAW 754 *********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.911 | 358 | 735 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.3E-110 | 384 | 754 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 758 aa Download sequence Send to blast |
MGSDSRFTEF PGSNKFEDEI VFPDSNQYHN VSNGFKFEDL DFDCVENPLV LPDPDPGALS 60 SITAIDEDSP SDDNDSENLL KYINQMLMEE DMEEKPCMFH DPLALQAAER SLYDILGEKN 120 QPSLPHDSPS YGDQFLVDSP DDVFWSSRSD YSSNKSSFSN SVSSVDPQGN GEFGEFKPLF 180 MQTPLPNNFV FHSAANFSSE SSFKLHNGLA SNGDSATKPS AGNIVAPNLF SDSDLALQFK 240 RGVEEASKFL PKGNPLIIDL ETSALAPEMN RDAPEVAVKA EKEDREFFPE WLTGKKNHER 300 EDEDFEEERS NKQSAVHVDE SELSEMFDML VGVGEGCRPP GCILDQAEQC ESSKTVRQNG 360 QTKGSSGSKT RAKIQGNNKE VVDLRTLLVL CAQAVSSNDR RAANELLKQI RQHSSPLGDG 420 SQRLANCFAN GLEARLAGTG TQIYTALSTE KWSAVDMLKA YQAYVSACPF KKMAIIFANH 480 NIMKVAEKAS TLHIIDFGIL YGFQWPPLIY RLSRRPGGPP ILRITGIELP QSGFRPAERV 540 QETGRRLVKY CERYNVPFEY NPIAQKWDTI QIDDLKINHD EVLAVNCLFR FKNLLDETVV 600 VNSPRNAVLN LISKTKPDIF IHAIVNGSYN APFFVTRFRE TLFHFSALFD MLDSNMPRED 660 EMRLKFEKEF YGREVMNVIA CEGSERVERP ETYKQWQVRN MRAGLKQLPL DPHVIKYLKC 720 KVKVRYHEDF EVDGDGHWMR QGWKGRTIIA SSAWIPA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 8e-52 | 367 | 756 | 1 | 379 | Protein SCARECROW |
5b3h_D | 8e-52 | 367 | 756 | 1 | 379 | Protein SCARECROW |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.6871 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G241700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208932 | 0.0 | AC208932.1 Populus trichocarpa clone JGIACSB1081-D10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002299867.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_024449614.1 | 0.0 | scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | B9GJM1 | 0.0 | B9GJM1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s24850.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 | Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G241700.1 |
Entrez Gene | 7465105 |
Publications ? help Back to Top | |||
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