PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G238400.2

Common Name

POPTR_0001s24540g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 323aa MW: 34422.4 Da PI: 9.854

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G238400.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.4	6.5e-38	67	127	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e alkcprC+stntkfCy+nny+lsqPr+fCk+CrryWt+GGalr vPvGgg+r+nkk++ Potri.001G238400.2 67 PEVALKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKKRK 127 56789*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-34	51	120	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.5E-32	70	125	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.376	71	125	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	73	109	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MVFSSVPFYL DPPNWQQQPS QQPGASNESP QLPPLPPPTH VGGSGTAGTI RPGSMADRAR 60 LAKIPQPEVA LKCPRCESTN TKFCYFNNYN LSQPRHFCKT CRRYWTRGGA LRSVPVGGGC 120 RRNKKRKVQS SSKSPVSSER QVGSTSSSTS ALPSQVIGHL PQQQSQLPYM TSLHNLAQFG 180 EGNIGLNFGG IQGQLGSTSG ASGQTDMGFQ IGSNSGMNSS AILSAGGVHQ FPFFEFSPAG 240 LYPLQSEGAE TPISVHGDNQ LQSMTSSSRV SQLAPVKTEG NQGLNLSKPY LGAPQNNQYY 300 WGGNTWADLS GLNSSSTSHL LR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	126	RRNKKRK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00281	DAP	Transfer from AT2G28810	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G238400.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024460176.1	0.0	dof zinc finger protein DOF2.2 isoform X2
TrEMBL	A0A2K2C2N4	0.0	A0A2K2C2N4_POPTR; Uncharacterized protein
STRING	POPTR_0001s24540.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.2	4e-46	Dof family protein

Link Out ? help Back to Top
Phytozome	Potri.001G238400.2
Entrez Gene	7485712