PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G238400.1 | ||||||||
Common Name | POPTR_0001s24540g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Dof | ||||||||
Protein Properties | Length: 333aa MW: 35591.7 Da PI: 9.854 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.3 | 6.8e-38 | 77 | 137 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e alkcprC+stntkfCy+nny+lsqPr+fCk+CrryWt+GGalr vPvGgg+r+nkk++ Potri.001G238400.1 77 PEVALKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKKRK 137 56789*****************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-34 | 61 | 130 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.7E-32 | 80 | 135 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.376 | 81 | 135 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 83 | 119 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MVFSSVPFYL DPPNWQQQPL NFSILQQQPS QQPGASNESP QLPPLPPPTH VGGSGTAGTI 60 RPGSMADRAR LAKIPQPEVA LKCPRCESTN TKFCYFNNYN LSQPRHFCKT CRRYWTRGGA 120 LRSVPVGGGC RRNKKRKVQS SSKSPVSSER QVGSTSSSTS ALPSQVIGHL PQQQSQLPYM 180 TSLHNLAQFG EGNIGLNFGG IQGQLGSTSG ASGQTDMGFQ IGSNSGMNSS AILSAGGVHQ 240 FPFFEFSPAG LYPLQSEGAE TPISVHGDNQ LQSMTSSSRV SQLAPVKTEG NQGLNLSKPY 300 LGAPQNNQYY WGGNTWADLS GLNSSSTSHL LR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 136 | RRNKKRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00281 | DAP | Transfer from AT2G28810 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G238400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024460176.1 | 0.0 | dof zinc finger protein DOF2.2 isoform X2 | ||||
TrEMBL | A0A3S9LK65 | 0.0 | A0A3S9LK65_POPTO; Dof-type zinc finger DNA-binding family protein | ||||
STRING | POPTR_0001s24540.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF656 | 34 | 143 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 2e-48 | OBF-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G238400.1 |
Entrez Gene | 7485712 |