PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G235800.1
Common NamePOPTR_0001s24250g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 198aa    MW: 21346.6 Da    PI: 10.1699
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G235800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000785577123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C+k F++   L  H  +H
  Potri.001G235800.1 55 FSCKTCNKNFPSFQALGGHRASH 77
                        89**********99999998887 PP
2zf-C2H212.50.00045102124123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  F+    L  H+r+H
  Potri.001G235800.1 102 HQCSICGLEFPLGQALGGHMRRH 124
                         79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.82E-953124No hitNo description
SMARTSM003550.465577IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9725582IPR007087Zinc finger, C2H2
PfamPF139124.5E-115579IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
PfamPF139123.4E-10101126IPR007087Zinc finger, C2H2
PROSITE profilePS501579.099102129IPR007087Zinc finger, C2H2
SMARTSM003550.075102124IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MKRDREQAEI DLAKCLMLLS KVGQADHEIL TNYRSAAAAA AAATAGAGAG AGRSFSCKTC  60
NKNFPSFQAL GGHRASHKKP KLKESTGNLL KLPNSPSKPK THQCSICGLE FPLGQALGGH  120
MRRHRAPNNV DTTSTSSKDH ELAVTQPPFL PAVPVLKRSN SSKRVLCLDL SLALPMYQND  180
SELQLEKVDR PMLRCFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G235800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM1729490.0FM172949.1 Populus tremula x Populus alba partial mRNA for putative Cys2/His2 zinc finger protein (ZFP2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299891.31e-144zinc finger protein ZAT12
TrEMBLA0A2K2C2J01e-143A0A2K2C2J0_POPTR; Uncharacterized protein
STRINGPOPTR_0001s24250.11e-127(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.19e-41C2H2 family protein